Coregonus clupeaformis (lake whitefish): 121585547
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Entry
121585547 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like isoform X2
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121585547
04121 Ubiquitin system [BR:
cclu04121
]
121585547
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121585547
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121585547
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-BED
hAT-like_RNase-H
DUF659
DBD_Tnp_Hermes
Rua1_C
Motif
Other DBs
NCBI-GeneID:
121585547
NCBI-ProteinID:
XP_041757803
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All DBs
Position
17:37740174..37742797
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AA seq
504 aa
AA seq
DB search
MANYRGEADEREIIKPPLRSSVWKHFGFCKDGDVLNKSLAVCRICKGQVKYNGNTTNLSN
HLLRRHGISHNTDRPGTSCSVPAATAAKGKVNSAEASGLACMFSQRLGQNSARAKNITAT
IAKFICKDMRPYSVVENPGFREMIQTLEPRYTIPSRPHFSEKVIPALYESTKNDVKLSLS
QAERVAITTDGWTSCSNQGYVTITSHHIDPEWKMKTFVLLTRVLNEAHTGKNIGALLREA
CMEWKIYDKNPAIVTDNARNMIVAGAEAQFSPHITCFAHTLNLASQKGLGVDRASRLLGK
VQNIVGYFHRSPIACHALEEKQTLMDLPKHKLIQDIITRWNSSFEMLERFLEQQPAIMAT
LMSKDLRKGVTDVGTLSESDIANMDDIVQLMGPVKMATTVMCEEDQPTLSVIAPLQAKLL
KHLQPCEDDSTLVAEIKRVMASDLSTRYRGTQDALNIASALDPRFKELPYLEKEDREQVY
TKLVFEAEVSHQLQMSHLLVRRKP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactacagaggagaagccgacgagcgagaaattatcaagccaccattgcggtcc
agtgtgtggaaacactttggcttttgcaaagacggagatgttctaaataagtcgctcgct
gtttgtaggatatgtaaaggtcaagtaaagtacaacggcaacacgacaaatctctccaac
cacctactaaggcgccatgggatttcacacaacaccgaccgtccaggcacctcttgcagc
gttcccgctgctacagcagcgaaaggtaaagtcaactctgcagaagcctcaggtctcgcc
tgcatgtttagtcagagactaggccaaaactcagctcgggcgaaaaacatcacggcaaca
attgccaagtttatctgcaaagacatgcgaccctacagtgtggttgaaaatccgggattc
cgtgaaatgattcaaacattggagccaaggtacacaataccaagccgaccacacttctca
gaaaaggttattcctgcattgtacgaaagtactaagaatgatgtgaagctgtcgctttct
caagctgaacgagtagcgataacgacagatggctggacgtcatgctcaaatcaagggtat
gtgacaattacctctcatcacattgatccggagtggaaaatgaagacctttgttctgcta
accagagttttaaatgaagcccatactggtaaaaatattggcgcgttactgcgtgaagcc
tgcatggagtggaaaatctacgacaagaatcctgccatcgtcacagataacgccaggaat
atgattgtggccggtgcagaagcccagttcagtccacacattacctgcttcgcacataca
ctcaaccttgcctcgcagaagggtttgggggtggaccgtgcttccaggttgttggggaaa
gtgcaaaatattgttggatattttcaccgcagcccgattgcatgtcacgccctagaggaa
aaacaaactctgatggatttaccaaaacataaactgatccaagacataatcaccagatgg
aacagttcattcgaaatgcttgaacgttttttggaacaacagccagctataatggcaact
ctgatgtccaaggatctacgaaagggggtcacagatgtaggcacgctgagtgagagtgat
attgccaacatggatgacattgttcagttgatgggtcctgtcaaaatggcaaccactgtg
atgtgtgaagaagaccagccaactctctctgtaattgctcctcttcaagcaaaactgctg
aaacacctacagccatgcgaagacgactcaaccctggttgcagagattaagagggtgatg
gccagtgacctctccacacgctacagaggcacccaagatgctctcaacatagcatcagcg
ttggacccgcgatttaaagaactgccctacctggaaaaagaggacagagaacaggtctac
acaaaactggtttttgaggcagaagtgtcccaccagctccaaatgagtcacctccttgta
agaagaaagccttag
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