Coregonus clupeaformis (lake whitefish): 121585816
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Entry
121585816 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
cclu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121585816
09124 Replication and repair
03420 Nucleotide excision repair
121585816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121585816
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121585816
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121585816
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121585816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
DUF7641
Motif
Other DBs
NCBI-GeneID:
121585816
NCBI-ProteinID:
XP_041758035
LinkDB
All DBs
Position
17:complement(65774637..65785230)
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AA seq
311 aa
AA seq
DB search
MPARADQGDSLGPDRHTRDVESLDKYALERWEVILHFMVGCPSAAISQDLSQLLIQAGLM
RTEAGDAPCITSAGFQFLLLDAASSLWDFTLQYLNTAQTRGMDLVEILSFLLHLCFSTLG
RDYSVEGMSESLLTFLQHLREFGLVFQRNRKSRRYYPTRLAITLSAGVSANSSSTAMGAA
PGTGDSGFIIVETNYHLLIVTLYMKCWSVASDLEWEMIMFFCFCAFQILHFLRTRGHPVM
LKQNPVLPPPPTTTGQIRLWELERDRLQFSEGVLSNQCLSQADSEVLRDRAQNLGCLVWQ
NVGELDHTEGA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgccagcacgggcagaccagggtgacagtctgggtcctgacagacatacccgtgacgtg
gagagtctggataagtatgccttggagcgctgggaggttatactccacttcatggtgggc
tgtcccagtgctgcaatcagccaagatctgtcccagctcctcattcaggctggcctcatg
agaactgaggctggagatgccccctgtatcacctctgctggtttccagttcctgctcctg
gacgctgcctcttccctctgggacttcaccctacagtacctcaacacggcacagactcga
gggatggacctggtggaaatcctgtccttcttattacatctgtgtttctccacacttggc
agggactactcagtggaaggtatgagtgagtctctgctcaccttcctacagcacctgaga
gagtttggcctcgtcttccagaggaataggaagtctagaaggtactaccccactagactg
gccatcaccctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctgcc
ccagggactggagattcaggtttcatcatagtggaaaccaactatcacctcttgattgtt
acactgtacatgaaatgctggtctgtggcttctgatcttgagtgggaaatgatcatgttt
ttctgtttttgtgcttttcagattctccactttctaaggaccagagggcatcctgtcatg
ctcaaacagaacccagtgctaccccccccccccaccaccacaggccagatcagactatgg
gagctggagagagatcgactacagttctctgagggagtgctgtctaaccagtgcctctcc
caggctgactctgaggtgttaagggacagagctcagaacctgggctgtctggtgtggcag
aacgtgggtgaacttgatcacacagaaggggcataa
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