Coregonus clupeaformis (lake whitefish): 121585882
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Entry
121585882 CDS
T08357
Name
(RefSeq) iroquois-class homeodomain protein irx-1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121585882
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121585882
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
121585882
NCBI-ProteinID:
XP_041758118
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Position
17:complement(16405218..16409759)
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AA seq
464 aa
AA seq
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MSFPQLGYPQYLSASQVVYGGDRPGVLTPSSRGGSSEIAGNQSAAAAAVTSVLGMYANPY
TAHNYSAFLPYSSADLALFSQMGSQYELKDSPGVHPGSFAAHTSPAFYPYGQFQYGDPAR
PKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK
VTWGARSKEDEDGNIFGSDNEGDTEKNDDEEEIDLESIDIDKIDDNDGDQSNDDDDDKPE
GRERDREFDSLEKRRPFALQHEAFDKSKNSISSGKELSDSNNNTRVLSPDRQGSFQLPVN
NKPKIWSLAETATSPDSSVKPTSPSGPAGHTPPQMQHPAFLPSHGLYTCQIGKFHNWTNG
AFLGQNSLLNVRSFLGVNQHHHHNHHLHTQQQLQQQTSVLVSAGAALNDKASPQLSPKHI
DRDNVVRSDSPPTQPLKSSFRPLHDGPRTQQEATQRVLTALSSA
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcccccagttgggctaccctcagtacttaagtgcctcccaagtggtgtacggc
ggggatcggccgggggtcctgactccgtcgtcccggggagggagctctgagatcgcggga
aaccagtcggctgctgccgctgcagtcacctcggtgttgggcatgtacgcaaacccctac
actgcacacaactacagcgcattcctgccttacagcagtgcagacctggctcttttctct
caaatgggctcccagtacgagctgaaggacagtcctggcgtccaccccggcagcttcgcg
gcccacacctcgccagccttctacccatacggccagttccagtacggggacccggccagg
cccaagaacgccacccgggagagtaccagcacgctgaaggcctggctcaatgagcacagg
aagaacccctaccccaccaagggagagaagatcatgttggccatcattactaagatgacc
ctgacgcaggtgtccacctggttcgccaacgccaggaggaggctgaagaaggagaacaag
gtgacgtggggggccaggagtaaagaggacgaggatggaaacatcttcggctccgacaac
gagggagacacggagaagaacgatgacgaggaggagatagatctagagagcatcgatata
gacaagatagacgacaacgatggagatcagagcaacgatgatgacgatgataaaccagag
ggcagagagcgagaccgagaatttgacagtctggagaaacggcggcccttcgctctgcag
cacgaggccttcgacaaatctaagaactcaatttcctccgggaaggaactttctgatagc
aacaacaacaccagagttctgtccccggacagacagggaagttttcagctcccagtgaac
aataagcctaaaatctggtcgttagctgagacggctaccagtcctgatagttctgtgaag
cccacctctccctccggccctgccggtcacacaccgcctcagatgcagcacccggccttc
ctgccctcccacggactatacacctgtcagataggcaagttccataactggaccaacgga
gcattcctggggcagaactctctgctcaatgtccggtcgtttctaggagttaatcagcac
catcatcataaccaccacttacatacccagcagcagctgcagcagcagacctcggtgttg
gtgtcggctggagcagcgctcaacgacaaggcctcgccacaactcagtcccaagcacata
gaccgtgataacgttgtaagaagtgactctcctccaacacaacctctgaagtcttcattt
agaccccttcatgatggccccaggactcagcaagaagccacgcagcgggttctaactgcc
ctctcctcggcttga
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