Coregonus clupeaformis (lake whitefish): 121585936
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Entry
121585936 CDS
T08357
Name
(RefSeq) polycomb protein SCMH1 isoform X1
KO
K11461
polycomb protein SCMH1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121585936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121585936
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
PRC1.4 specific proteins
121585936
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MBT
SLED
RBR
SAM_1
SAM_2
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
121585936
NCBI-ProteinID:
XP_045082064
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Position
17:complement(19058938..19109980)
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AA seq
725 aa
AA seq
DB search
MRKPVPQKAIEWKDGRRIKHARSGRPSRVPSQYHGGHFSWDKYLKETGASAAPAHCFRQG
ATPPVNEFKAGMKLEAQDPRNTTSTCIATVVGLTGSRLRLRLDGSDNKNDFWRLVDSSEI
QPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPARIFHKQEPPVPEQNSFQV
GMKLEAVDRKNPHFICPATVGALRGVEVLVTFDGWRGAFDYYCRYDSRDIFPVGWCSLTG
DNLQPPGTKAVLPKTLGCLSDGSEGTAMHTMPGQPPGQRGRKPGRRKTKLTGPWGQKGAG
VGPQAPPPGKGLEPIKVPKKRGPKPGSKLGWAKRAGWLEGAMAGPGRPVSRPRGRLPANW
AQRMALQEGHVESIKIPKKRGPKPGSKKKPRVVPNPVPVSPTSSMPEPDTSTVPLDNATI
PSAALQAATVCVYLNKYGKVGPHLDGRRVQQLPDHFGPGRVSSVLQQCVQACVDCAHNQS
SVFSCLKPGHGGEVISAHFDQQHHTLTLPTVNSVTYVLRFLEKLCHNLYCDPLFGSQPVP
RGGQHYDSHTYPERRSFREGLTTGPGRGSKRFLQDSYYSPLPHKLAKNLCLSSEGKPFLM
ENGVGESEHLKKSPLSPGSTGQPLGLRSPTKLLHLNSSGSERFRESPRPSGQDPNLWTVE
DVMQFIRDIDPLLAPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLTFHIDRLK
HGRPY
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagccagtgccacaaaaagctattgagtggaaagatggcaggcggatcaagcat
gcccgaagtggccgtccctcccgggtcccatcgcagtaccacggagggcacttcagttgg
gacaaatacctgaaggaaacaggtgctagtgcggcacctgcccactgcttcagacagggc
gcaacgcctccagtgaatgagttcaaggcgggcatgaagctggaggcgcaagaccctcgg
aacaccacgtccacctgcattgctacagtggtgggcctgacgggatcgcggctgcgcctg
cgcctcgacggctccgacaacaagaacgacttctggcgcctggtggactcgtcggagatc
cagcctatcggcaactgcgagaagaacgggggcatgctgcagccgccattgggcttccgt
ctgaacgcgtcctcctggcccatgttccttctaaaaacactcaacggtgccgaaatggcc
ccagcacgcatctttcacaagcaggagcccccggtcccagagcagaactccttccaggtg
ggcatgaagctggaggcggtggaccgcaagaacccccacttcatctgcccggccacggtg
ggggcgctgcgcggcgtggaggtgctggtcaccttcgatggctggcggggtgccttcgac
tactactgccgctacgactcccgggacatcttccccgtgggctggtgctctctcaccggg
gataacctgcagccgcccggcaccaaagcagtgctacccaagaccctcggttgcctttca
gacggtagcgagggaacagccatgcacaccatgccaggacagccgcctggccaacgggga
cgcaagccaggccgcaggaaaaccaagctgacagggccctggggccagaagggggccgga
gtaggaccgcaggcccccccgcccggaaagggactggagcctatcaaggtccccaagaag
agaggccccaaaccggggagtaagttgggctgggcgaagagagcaggctggctggagggt
gccatggcaggcccagggcgacctgtgtcccggcccagagggagactgccagccaactgg
gcccagaggatggccctgcaggagggtcatgtggagtccatcaagatcccaaaaaagaga
gggcccaagcccggcagcaagaaaaaaccgcgggtggtgcccaaccccgtgcccgtttcc
cccaccagcagtatgccagagccagacaccagcacggtgcccctggacaatgccaccatc
cccagcgctgccttgcaggctgccacagtgtgtgtatacctgaacaagtatgggaaggtg
ggcccccacttggacggccggcgggtgcaacagctgcccgaccactttggtccaggccgg
gtttcctcggtgctacagcagtgtgtccaggcctgtgtggactgtgcccacaaccagagc
tctgtcttctcctgcctcaagccaggtcacggaggagaggtcatatcagcccactttgac
cagcagcaccataccctcaccctgcccacggtcaacagcgtcacgtacgtcctgcgcttc
ctggagaaactctgtcacaacctctactgtgaccctctgtttggcagccagcccgtcccc
cgagggggccagcattacgacagccacacctacccagaaaggagaagttttagggagggc
ctcacgacaggtccaggcagaggctccaagcggttccttcaagactcctactacagcccc
ctcccccacaagctggccaaaaacctctgcctctcctcggaaggtaagcccttcctcatg
gagaacggtgtaggggagtcggagcacttaaagaagagccccctgtccccaggctcgaca
gggcagcctctgggcctgcggtcccccaccaagttgctacatctcaactcttcaggctct
gagcgtttcagagagagccctcggcccagtggccaggaccccaacctgtggacggtggag
gacgtcatgcagttcatcagagacatagaccccctactagccccccacgcagacctcttc
agaaaacacgagattgatggcaaagccctcctgttactacgcagcgacatgatgatgaaa
tacatgggcttgaagctcgggcctgccctgaaactcacattccacatcgacaggctcaaa
catggacgcccttattga
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