Coregonus clupeaformis (lake whitefish): 121585962
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Entry
121585962 CDS
T08357
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121585962
09123 Folding, sorting and degradation
03018 RNA degradation
121585962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121585962
03041 Spliceosome [BR:
cclu03041
]
121585962
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121585962
mRNA cycle factors
Stress granule specific factors
121585962
Spliceosome [BR:
cclu03041
]
Complex C
Other components
Complex C specific factors
121585962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RBD_RDR6
RRM_7
RRM_5
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
121585962
NCBI-ProteinID:
XP_041758262
LinkDB
All DBs
Position
17:complement(15589152..15594899)
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AA seq
630 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYVPGPALSIRVMTDDSGKSRGFGFVSF
ERHEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQN
RAAYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMM
AGQRMATQALGQRPAGAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVMQQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagcgcgcccagttacccgatggcctcactctacgtcggcgacctgcaccag
gatatcaccgaggccatgctgtacgagaagttcagccccgccgggcctatcctctccatt
cgagtctgcagggacatgatcactcgtcgatccctcggatatgcctacgttaacttccaa
cagccagccgatgctgagcgtgccctggacaccatgaacttcgacgtcatcaaggggaga
cctctgcgcatcatgtggtctcagcgcgacccttccctgaggaagagtggggtgggcaac
atcttcatcaagaacttggacaagtccattgacaacaaggccctctatgacaccttctca
gccttcggcaacatcctctcctgcaaggtggtttgtgatgagaatggctcaaagggctat
ggctttgtgcactttgagacccaggaggctgctgaaagagccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtgttcgtcggacgcttcaaatcccgcaaagagcgcgag
gctgagcttggagccagagccagagagttcaccaatgtgtacatcaagaactttggagaa
gatatggatgatgagaagctgagggagctgtttgggaaatatgttccaggaccggccctg
agcatcagggtgatgacggacgacagcgggaagtccagagggttcggcttcgtcagcttt
gagaggcatgaggatgctcagagggctgtagatgagatgaatgggaaggattttaacggc
cgccaggtgtacgtgggccgcgcccagaagaaaggagagcgccagacggagttgaaacgc
aagtttgaacagatgaaacaggaccgcatgacccgctaccagggggtcaacctgtacgtc
aagaatctggacgatggccttgacgatgagcgtctaaggaaggagttctctcccttcggt
accatcaccagtgccaaggtgatgatggagggtggccgcagcaagggcttcggcttcgtg
tgcttctcctcccccgaggaggccaccaaggctgtgacggagatgaacgggcgcatcgtg
gccaccaagccgctgtacgtggcgctggctcagaggaaagaggagcgccaggctcacctc
accaaccagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctcaac
ccctaccagcctgcccctccctctgggtacttcatggctgccatcccccagactcagaac
cgtgctgcttactactccaccaaccagctggctcagctgagaccaggcccacgctgggcc
acccagggtgtcagaccacagcacttccagaacatgcccaacgccatgcgtccgtccgcc
cccagaccccagacctttggcgccatgaggccctcgtcatctcaggtgccacgcatgatg
gccggccagagaatggccacccaggccctgggccagcgtcctgccggtgcggcggctgca
gccccagtgaggatgccccagtacaagtatgcagcaggtgtgaggaacccccagcagcac
atggccagccagccccaggtaatgcagcagcctgctgtccacgtccagggtcaggagcct
ctgactgcctccatgctggccgctgctcctccccaggaacagaagcagatgttgggtgag
cgtctgttccccctcatccagaacatgcaccccagcctggctggaaagatcactggtatg
ctgttggagatagacaactctgagctgctccacatgctggagtctcccgagtctctccga
tccaaggtggatgaggctgttgctgtgctgcaggcccaccaggccaaggagtccgcccag
aagcccaccaaccctgctggagtccccagctaa
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