Coregonus clupeaformis (lake whitefish): 121585973
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Entry
121585973 CDS
T08357
Name
(RefSeq) ras and Rab interactor 2 isoform X1
KO
K23687
Ras and Rab interactor 2/3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121585973
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
121585973
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIN1
VPS9
RA
RA_3
Lpg0393_VPS9
SH2
IQ_SCN5A_C
RA_2
SH2_1
RelB
Motif
Other DBs
NCBI-GeneID:
121585973
NCBI-ProteinID:
XP_045077771
LinkDB
All DBs
Position
1:complement(52392420..52465858)
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AA seq
1085 aa
AA seq
DB search
MMLEFCLFYLLLFYTFKLIDSFVWEIGNLKKEMVQKAEVAEGDPEPVILQGLDREVGGLF
LQAPPCVGVRAGLAGARDSGYNSLHRRMSVLDRLVQTHAVWLQLGLSHAEATCKLQPQPT
GTFLVRKSTTLQRKVISLRMHQDSETPVKNFPVTECQYTFSLEGSGLSFADLFRLVAFCC
ISRDVLPFTLKLPEAISAARTPTDLEEVAKLGAGFCDSEHCRRRSSVSWLSRTTTHDQSP
SLRQRSVSTPLVTRTPSQLECSQSNRALCFINPLFLKVHHPEGGNHTPPSSTSHNNPHHL
NNNSTTTATTVQVQQQHCTSNPEQLNDSPQPHSDSPQSDSPGNSPQHHNSCVSVSVSLAN
RVSRPPPPRPPPPCCAPLRPASPQRQHSMPDKISWINPPKEPERVGEREKGGEREKGSSL
LSRLGSSLSISPSSPFLSSSSSFLSSTPPKKLSISAPISIPLSLPSPSDVDCHLALDDQT
IENAISLSLAKLSLRNTITPDDNTEGNSPSTQDQARSRREEGGGSGRGGREGDCVQRLSD
MSLSTDSSTDSVDLSQGFFPPLPEPSPPTTNNLVLPLLTHPYSSMEEDDDDEDEADFGVS
LENDQDQDLTLTPPGQRTKRRASAGAMVIQRALRGHLRKMSGMFNSLLTPEKRAIQRVLE
LSRDKGSYFGCLVQDYLSFLQEGGGSQAWQCHTSGLELLQTLRQFITQMKSYLRQSSELE
PPIESLIPEDQIDYVLEKAMHKIVLKPLKGVVGAALQEFQVRSGVWQELKENLSLAKARQ
PQEMGVAIAFPPDPVAIEKIRHKFHTMCKLYSPEKKVTMLLRVCKLIYTIMEDKSGHLYG
ADDFLPMLTYVLAQCDMPQLDNEILYMMELLDPSLLHGEGGYYLTSAYGAMSLIRNFQEE
QAACVLSSETRNTLHQWHRRRTTQRTVPSVDDFQNYLRVALQKLDSGCTAKTLQVQPYAT
TEEICQICACKFKVPDPENYTLILLTEGSCQQLAPDTHPQKIKAELHSRPQATPFHFVFC
RVANLNDLPVTSFDPQSNFTLTTESEPNFNGVALTPSDPQPNLNLGPSLSLSLPPNQHNG
NSISI
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgatgttagaattttgcttattttacctattattattttacactttcaagctgatcgac
tcgtttgtctgggagatcgggaatctgaagaaggagatggtgcaaaaggctgaggtagca
gagggagacccagagcctgtaatactacaggggctggatagggaggtgggaggtctgttc
ctacaggctcctccctgtgttggcgtgagggcggggcttgctggagcgagggattcgggc
tacaactctttgcatagaaggatgagtgtgctggacaggctggtgcaaacgcacgctgtg
tggctgcagctgggactgagccatgcagaagccacatgcaaactgcaaccacagcccact
gggacgtttctggtgagaaagtcgactaccctgcagaggaaggtgatctctctgcggatg
caccaggactctgagacacccgtcaaaaatttccctgtgacggagtgtcaatacacgttc
tccttggagggatcgggcctcagctttgcagacctgttccgtcttgtggctttctgctgc
atcagcagggatgtcttgccattcactctaaagcttcctgaagccatctctgcagccagg
acgccaacagacttggaggaggtggccaagctaggagcaggattctgtgactctgaacat
tgccgtaggaggagttctgtctcctggttgtccaggacaaccacccacgaccaatcacct
agcctgaggcagagatccgtttccacacccctggtcacccgcaccccgtcccagctggag
tgttcccagtccaatagggctctctgcttcatcaacccccttttcctaaaggttcaccac
ccagaggggggcaaccacacccctccctcctccaccagccacaacaacccccatcaccta
aacaacaacagtacaactacagctacaactgtacaagtacaacaacagcactgtaccagc
aacccagagcaacttaacgacagccctcaaccccatagcgacagccctcagagtgatagc
cctggcaacagcccccagcatcataacagctgtgtaagtgtgagcgtgagcctggctaac
agagtttcccgcccgccacctcctcgccccccacctccctgctgtgccccccttcgccct
gcctcccctcaacgccagcacagcatgcctgataaaatatcctggatcaacccgcccaaa
gagccggagagggtgggagagagggagaaaggaggagagagggagaagggcagtagcctt
ctctcccgcctgggctcctctctcagcatcagcccttcctctcctttcctctcctcctct
tcctctttcctctcatccacccctcccaagaagctcagcatcagtgcccccatctccatc
cccctgtccctcccctccccaagtgacgtcgactgccatcttgctctcgatgaccagact
attgagaatgccatatctctcagtctggctaagctgtctctgagaaacaccatcaccccc
gatgacaacacagagggaaacagtccgtccactcaagaccaagcccgctcccgccgagag
gaaggaggaggaagtggaagaggcggaagagaaggggactgcgtccagcgcctgagcgac
atgagcctttccaccgactcctccactgactcagtagacttgtcccagggcttcttcccc
ccactccctgaacccagcccacccaccacaaataacctggtgctgcccctcctcacccac
ccctacagcagcatggaggaagacgatgatgacgaagacgaagcggacttcggcgtgagc
ctggagaacgaccaagaccaggacctgaccctcacccctcccgggcagcgcaccaaacgg
cgagccagtgccggggccatggtcatccagcgggccctcaggggccacctccgtaagatg
agtggaatgttcaactccctcctaacccctgagaaacgggccatacagagagtcctggag
ctgtccagggataagggctcatactttggctgcctagtgcaggactacttgagcttcctg
caggagggagggggcagccaggcctggcagtgccacacttcagggctggagctgctgcag
acgctacgccagtttatcacccagatgaagagctacctgcggcagagctctgagctggag
ccccccatcgagtcactcatcccagaggaccaaatcgactatgtcctagagaaggccatg
cataagatagtcctgaagcccctgaaaggtgtggtgggggcggccctccaggagttccag
gtccgcagcggggtgtggcaggagctcaaggagaacctctcattggccaaggcccggcag
ccccaggaaatgggcgtggccatcgccttccctccagatccagttgccatagagaaaatc
cggcacaagttccacaccatgtgtaaactctattcacctgagaagaaggtgaccatgctg
ctgcgcgtgtgtaaactcatctataccatcatggaggacaaatcaggtcatctgtatggg
gcagatgacttcctgcccatgttgacctatgtgttggcccagtgtgacatgcctcaacta
gacaacgagatcctctacatgatggagctgctggacccctctctgctccatggagaaggt
gggtactacctgaccagtgcatacggagccatgtccctcatcaggaacttccaagaggag
caagcagcttgtgtactcagctctgaaacacgcaacacactccaccagtggcaccgtcgc
cgcaccacgcagcgcactgtgccctccgtcgatgacttccagaactacctgcgagtagcg
ctccagaagctggacagcggctgcacggccaaaaccctgcaggtgcagccctatgccacc
actgaggaaatctgccagatctgcgcctgcaagtttaaagttcccgaccctgagaattac
accctaatcctgctcactgagggctcatgccagcaactagcccccgacacacacccccag
aagatcaaagctgagctccacagtcgaccccaggccacaccttttcacttcgtcttctgt
cgtgtggctaacctcaatgacctgcccgtgacctcgtttgatccccagtccaacttcaca
cttaccacagaatctgagcccaactttaatggtgtggccttgaccccttctgacccccag
cccaatctcaacctgggtcccagtctcagcctcagtctaccccccaaccagcacaatggc
aactccatatctatctga
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