Coregonus clupeaformis (lake whitefish): 121586057
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Entry
121586057 CDS
T08357
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121586057 (cdkal1)
Enzymes [BR:
cclu01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
121586057 (cdkal1)
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
121586057 (cdkal1)
Prokaryotic type
Methylthiotransferases
121586057 (cdkal1)
SSDB
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Paralog
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
121586057
NCBI-ProteinID:
XP_045082212
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All DBs
Position
17:complement(30085320..30734820)
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AA seq
564 aa
AA seq
DB search
MPSACDSLIDDIEDMVSADDPTPQERQYARKSVIPRARKRNTQQTTEVLQADSLIPGMQK
IWMRTWGCSHNNSDGEYMAGQLAASGYKMTEDPAEADLWLLNSCTVKNPAEDHFRNSIKK
AQEQDKKVVVAGCVPQAQPRMDYLKGLSIIGVQQIDRVVEVVDEAVKGHSVRLLGQKKDN
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGKDIGTDLPTLLWRLVEEIPEGAMLRLGMTNPPYILEHLEEM
SKILNHPRVYAFLHVPVQSASDSVLMDMKREYCADDFRRVADFLKDKVPGITIATDIICG
FPGETDADFQETCDLVKEYRFPSLFINQFYPRPGTPAAKMDQVPAQVKKQRTKELSALFH
SYNPYHHKIGETQQVLVTEESFDSQYYVAHNKYYEQVLVPKRSEFKGKMIEVEIFEAGKH
FLKGRPLDGCKVFTPSIAEPLQKGEVSGLTQEQLSLQQNGSISSSGVLTASWSPWSWDRE
GLKLLSISLAVVAIIVVFMWEKLH
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcttgtgactccctgatcgatgacattgaggacatggtgtcagctgacgac
ccgactccacaggagaggcagtatgccaggaagagcgtcatccccagagccaggaagaga
aacacccagcagactacagaggtgttgcaagcagacagcttaatccctggcatgcagaag
atctggatgaggacatggggctgctcccacaacaactcagatggggaatacatggccgga
cagctggcagcgagcggatacaagatgacagaggacccagcagaggctgatctgtggctg
ctcaacagctgcactgttaaaaacccggccgaagatcacttcagaaactccatcaagaag
gcccaggagcaggataagaaggtggtggtagctggatgtgttccccaggcccagcccagg
atggactaccttaaaggactcagcatcatcggggttcagcagattgaccgtgtggtggag
gtggtggacgaggctgtgaaaggtcactcggtgcgtctgctgggtcagaagaaagacaat
gggaagcgtctcgggggagccagactggatctgcccaagattagaaagaaccctctgata
gaaataatttccatcaatacaggttgtctgaatgcgtgtacgtactgtaaaaccaagcat
gctagaggagacctggccagctaccctatagaggaactagtagagagagccagacagtcc
ttccaagagggtgtgtgtgagatctggctgaccagtgaggacaccggggcatatgggaag
gacattgggacagacctgcccactctgctatggagactagtggaagagattcctgaagga
gccatgttgagactgggcatgaccaaccctccatacatcctggagcacctagaggaaatg
tctaagatcctgaaccatcctcgtgtgtatgccttcctccatgttccggtgcagtctgcc
tctgacagtgtcctgatggatatgaagagggagtactgcgctgacgacttcaggcgcgtc
gctgacttcctaaaagacaaggttcctggtatcaccatcgcaacggacatcatctgtggt
ttcccaggggagacggatgctgacttccaggagacatgtgacctggtgaaggagtatcgc
ttccccagcctcttcatcaaccagttctacccccggcctggcacccccgccgccaagatg
gaccaggtccccgcccaagtgaaaaaacaacgaacaaaagagctgtcagccctgttccac
tcctataacccctaccatcacaagattggggagacccagcaggtgcttgtgactgaagag
tcatttgactcccagtactatgtggctcacaacaagtattatgagcaggtactggtgccc
aagaggtcagagttcaaggggaagatgattgaggtggagatcttcgaggcagggaaacac
ttcctgaagggaagaccgctggacggttgtaaagtgttcactccctccatcgccgagccg
ctgcagaagggagaggtgtctgggctaactcaggagcagctgtccctccagcagaatgga
tccatatcctcctcaggcgtgctgactgcgtcctggagcccctggagctgggacagagag
gggctgaagctgctgtctatcagcctggctgtagtggctatcatagtggtcttcatgtgg
gagaaactccactga
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