Coregonus clupeaformis (lake whitefish): 121586073
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Entry
121586073 CDS
T08357
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121586073
Proteoglycans [BR:
cclu00535
]
Extracellular matrix (ECM) proteoglycans
Others
121586073
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_Tor_3rd
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
121586073
NCBI-ProteinID:
XP_041758463
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All DBs
Position
17:21242511..21477602
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AA seq
1903 aa
AA seq
DB search
MLVVGLPIRTWCPLLFLVLAVHFPAPAQGQVPAPRRLRFKVLGTSKLHVSWKEPKGNVDG
YRVLYNSEPGEEEKELRVSQRDNKVVIQDFDAMKEYHVRVLAVSGNQQSRALQGKYAAQD
LEGEGGEGEGTLPLRLDDTGGAEDINEISGVDPFVCTTQAIADIVILVDGSWSIGRINFR
LVRMFLENLVNAFSVGIDETRIGLAQYSGDPRIEWHLNAFSTKDAVLDAVKNLPYKGGNT
LTGLALTYILENSFKPESGSRSGVPKVGILITDGKSQDDVIPPAQSLRDAGVELFAVGVK
NADENELRAIASEPDNTHVYNVADFSIMSSIIEGLTKIVCERVEEQDKEIKGESAEQETQ
GAPQDLVISEVTARSFRVSWSHAPGSVEKYRVVYYPATQGGRPEESVVDGTVNSVVVQNL
NSLTEYQLAVFAVYTSSASEALRGSETTLALPMVNGLELYDVTHNTMRARWSGVQGVSGY
TVLYAPLTEDGTSDEKEMKVSDAVTDLELEALTPATEYTVTVYAMYGEEASDPMTNQETT
LSLSPPKNLVFSEVDHNSAKLSWEAASRKVTGYRIMYVKTGGLQTNEVEVGPVTSWTLND
LTSVMEYEVAIFGIYNEGQSEALSGMFTTDPVPGHLDLQASEVTTESFRVSWGHFVPGIV
LYKLTWASNDGEDTKEMVLSGDVDSFLLSGLSPNTEYEVMLQAIFKDQSESDAVLVVETT
LARTTTVATTTPVVRQAVRGLQVQDETTYSLKVSWQLEDPKVDQYRVTYVSLTGDRNEDS
VLVPGQQTTVLLQPLLSDTEHKVTVTPVYTDGQDGISVSSVGRTLPLSAPSNLRVSEEWF
SRFRITWDTPPSPTMGFRVVYQPTTVPGSALEAFVGDDVNTMLILNLQSDTEYSVKVIAS
YTTGSSQPLQGTAKTLYLGVTNLNTYQVMMSSLCAQWQPHRQANLYRVVIESLLNGQKQE
VSVGGSASRQCFYGLTPNSQYQISVSTQLQDMEGPDVTTITTTLLAPIQPPTPPPTSPPL
PTIPPAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIRFLYSTMGALDRIGPDGTQVAIAQ
FSDDARTEFKLNSYANKETLLDAIQRITYKGGNTKTGRAIKHVKESIFTAEGGVRRGVPK
VLVVLTDGRSQDDVNKVSKEMQMEGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLD
AVKKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMEMFGLVEKEYSNVEGVSLEPGSF
NSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITILFRLLPETPQEPFALWEILNKDNEPL
VGVILDNGGKTLTFLNHDYKGDFQTVTFEGPDIKKMFYGSFHKLHMTVSKTTARVVIDCK
VVEEKPINAAGNISIDGVEVLGRMVRSRGKRDNSAPFQIQMFDIICSTSWASRDKCCELP
GLRLEEDCPAMPHACSCSQDSKGPPGPTGPPGGAGIRGARGNQGEPGNVGPQGLVGDKGP
PGPQGPPGPQGPSGHSIQGPPGGNGEKGEKGDIGFPGPQGIGGSPGGPGRDGQVGHRGLP
GKDGPQGQQGTTGPVGSPGAPGAPGGSGSPGPLGDQGPPGSAGTKGEKGERGDLQSQATV
RALAHQVCEQLIQSHLSRYNSILNQIPTQSVSVRTVPGPPGEPGRRGLPGPQGEGGPPGR
PGFPGTNGQNGRPGERGFPGEKGERGSQGVGTQGPRGPPGPPGILGEGRTGSQGPPGRPG
SQGPPGRPGTPGSTGPAGAAGYCDQNSCLGYNVGVQQLPHTNYQNYDPTGRYDPHGNYNN
DEDEEDDEEEDPYAGYRGYPPQYYQPNYPAPQSHSQDTELRSPGIMMRRFSRDVVTQRRA
TANTAQTGHTDQTGQRSEAAADTEGEVEVIGEAQTGQKAVYSY
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atgctggttgtaggactcccaataaggacgtggtgtcctctgctcttcctggtgttggct
gtacatttcccagctcctgcccagggtcaagttccggctcccagaagattacgttttaaa
gtgctgggtacgagcaaattacatgtatcgtggaaagagccaaaagggaacgttgacggc
tatagagttttatacaacagtgaaccaggtgaagaggagaaggagctgcgtgtttctcag
agggataataaagtggtgatacaggactttgacgccatgaaggagtaccacgtcagggtt
ctagctgtgagtgggaaccagcagagcagagcactacaagggaagtatgcagctcaagac
ctggagggtgagggaggagagggtgagggcacattgccactgagacttgatgacactgga
ggggctgaagacatcaacgagatatctggagtggatccgtttgtctgtacaactcaggcc
atagctgacatagtgatcctggtggatggatcctggagcatcggcaggatcaacttccgc
ttggtccgcatgttcctggagaacctggtcaacgctttcagcgtcgggatcgacgagacc
aggataggtctggcccagtacagtggggaccccaggatagagtggcatctgaatgccttc
agcactaaagatgcagtactggatgctgtgaagaacctgccctacaagggaggcaacaca
ctgacaggcctggccctgacctatatcctggagaacagcttcaagcccgagtcgggctcc
aggagtggcgtacccaaagttggtatcctgatcacagatgggaagtcccaggatgatgtg
atcccccccgcccagagcctgagggacgctggcgtcgaactcttcgccgtcggtgtgaag
aatgctgatgagaatgagctgagggccatagcttctgagcctgacaacactcatgtgtac
aacgtggcagacttcagcatcatgagctctataatagagggacttaccaagatagtctgt
gaacgggtagaggagcaggacaaggagatcaaaggagagtctgcagaacaggagacacag
ggagctcctcaggacctagtgatatcagaggtgacagccaggagtttcagggtgtcctgg
agtcacgcccccggcagtgtagagaagtaccgtgtggtgtactaccctgctacccaggga
ggacggcctgaagagtctgtggtggacggcacagtgaactctgtggttgtgcagaatctc
aactccttgacagagtaccagttagctgtgtttgctgtctacaccagctcagctagcgag
gcacttcgtggcagcgagaccacattggctcttcccatggtgaacggcctggagctgtac
gatgttacccacaacactatgcgggcgcggtggagcggtgtgcagggcgtctcggggtac
acggtcctctacgcccccttgaccgaggacgggacctcagacgagaaagagatgaaggtg
tcagacgcagtaactgatctggagctagaggccttgactcctgctacagagtacactgtg
acagtctatgccatgtatggagaagaggctagtgatcctatgactaaccaggagaccacc
ttgtcactgagccctcccaagaaccttgtgttctctgaggtggaccacaactcagccaaa
ctgtcgtgggaagctgcctctaggaaggtgacaggataccgcatcatgtacgtcaagact
ggcgggctacagactaatgaggtggaggtgggtccagtcacgtcctggactctaaatgac
ctgacgtctgtaatggagtatgaggtggccatctttgggatctacaacgagggccaatca
gaagccctctctggcatgttcaccaccgaccctgtgccaggccaccttgacctccaggcc
agtgaggtcaccacagagagcttccgggtcagctggggtcactttgttccgggcatcgtc
ctctacaaactgacctgggcttctaatgatggagaggacactaaggagatggttctaagt
ggtgatgtggactccttcctcctcagtggactgagccctaacacggagtatgaagtgatg
ctccaagccatcttcaaagaccaatcagagagtgatgcagtgttagtggtggagacaaca
cttgccaggacaacaacggttgccactacaacgccagtggtgcgtcaggcggtgagaggc
ctacaggtccaggatgagaccacctatagtctgaaggtgtcatggcagctggaggaccct
aaggtggaccagtacagagtcacctacgtcagcctcacgggagaccgcaacgaggattca
gtcctggtgcctgggcagcagaccacagtccttctccagcctttgctgtctgacacagag
cacaaggtgaccgtcaccccagtctacacagacggacaggacggcatcagtgtgtcttct
gtgggcagaacattgcccctctcagcacctagcaacctgagggtgtctgaggagtggttc
agccgcttccgcatcacctgggacacacctccttctcccaccatgggcttcagggtagtc
taccaacccaccactgtgccggggtcagctctggaggcctttgtgggagacgacgtcaac
accatgctgatcctgaacctgcagagtgacactgagtacagtgtgaaggtcatcgcttcc
tacaccacgggatccagccaaccactccagggcaccgccaaaacattgtacctgggcgtg
accaacctgaacacctaccaggtgatgatgtccagtttgtgtgcccagtggcagccccat
cgccaggctaacctctacagggtggtcattgagtctctgctcaatggccagaagcaggaa
gtgagtgttggaggctctgcatctagacagtgtttctatggtctgactcctaacagccag
tatcagatcagtgtttccacccagctacaggacatggaggggcctgatgttaccaccatc
actactacacttcttgcccccatccagccaccgacaccaccccccacgtcacccccccta
ccgaccataccgcccgccaaggaagtctgtaaggcagccaaagctgacctggtcttcttg
gtggacggctcttggagcatcggagacgacaacttccagaagattatacgcttcctgtac
agtacgatgggagctctggatcggattggtcctgacggcacacaggttgctatagcacag
ttcagtgatgatgccaggacagagttcaagctgaactcatacgctaacaaggaaacgctg
ctcgacgccatccagcgtatcacatacaagggagggaacaccaagacaggccgagccatt
aagcatgtgaaggagtctatcttcaccgcagagggaggagtgaggaggggggttcccaag
gtactggtggtcctcaccgatggccgctcccaagatgacgtcaacaaagtctccaaggag
atgcagatggagggctacatcatctttgccattggctttgctgatgcggactatggagag
ttggtgaacatcgccagcaaacccagtgacagacacgtcttctttgtggacgatttggac
gctgtcaagaaaattgaggagcagctgatcacttttgtgtgtgaggctgccactgccact
tgtccatcagttctgatgagcggcaacacaatggcaggcttcaggatgatggagatgttt
ggcctggtagagaaggagtacagtaacgtagagggggtgtccctagaaccaggatccttc
aacagcttcccctgctacagactgcacaaagacgccctggtctcacagcccaccaagtac
ctccacccagaaggtctgccctctgactacaccatcaccatcctgttccgcctgctacca
gagaccccccaggagccctttgcattgtgggagatcctgaacaaagacaatgaacccctg
gtgggggtcatcctggacaatggtgggaagactctgacgttcttgaaccacgactacaag
ggagacttccagacagtcacatttgaagggcctgacatcaagaagatgttctatggcagt
ttccacaagctccacatgacggtcagtaagaccacagccagagtggtgattgactgtaag
gtagtggaagaaaagcccatcaacgcggctggcaacatcagtatagacggagtggaggta
ctgggacgcatggtacgatccagggggaagagggacaactcagctccgttccagatccag
atgtttgacattatctgcagtacgtcctgggccagtcgagacaagtgctgtgagctccct
ggactgaggctggaggaggactgtcctgccatgccccatgcctgtagctgttctcaggac
agtaaaggacctcctggacccacgggaccccccggaggtgctggtataagaggggccaga
ggaaatcaaggggagccaggcaatgtggggcctcaaggactagttggtgataaaggtcct
ccaggaccacagggccctcctggccctcaagggcctagtggacattccatccagggacca
ccgggtggtaatggtgaaaagggagagaaaggagatattggtttcccaggacctcagggt
attggtggatctcctggcggaccaggaagagatggacaagttggacacaggggcctgcct
gggaaggatggaccacaaggacagcagggtactacaggccccgtcggcagtcctggagca
cccggggcccctggtggaagtggctctcctggaccgctgggagaccagggaccacctggc
tctgctggtaccaaaggagaaaagggtgaacggggagacctgcagtctcaagctaccgtc
agggccttagcacaccaagtgtgtgagcaactgattcagagtcacctgtctcggtacaac
tccatcctgaaccagatccccacccagtcagtgtctgtgaggacagtaccaggacctcca
ggagagcctggtcgcaggggtctgccagggccgcagggagagggggggccccctggcaga
ccagggttccctgggaccaacggtcagaatggacgaccgggggagagaggtttcccagga
gagaagggggagagggggagtcaaggtgtggggacacagggccccagaggtcccccaggg
ccaccaggtattctaggagagggccgtacaggcagccagggccccccaggtagaccaggc
agccagggccccccagggcgaccgggcacccctggatccacgggccccgctggtgctgct
ggctactgtgaccagaactcctgtttgggctacaacgttggagtacaacaactcccccac
accaactaccaaaactatgaccccactggccgttatgacccccatggaaattacaacaac
gatgaggatgaggaagatgatgaggaagaggacccatacgctgggtatagaggctacccc
cctcagtactaccagcccaattaccctgcaccccaatcccactcccaggacactgagcta
aggtccccagggataatgatgaggcgcttctccagagacgtggtcacacagaggagagcc
accgctaacacagcccagacaggacacacagaccagactggacagaggagcgaagctgca
gcagatactgaaggagaagtggaggtgattggagaagcccagacaggacagaaagctgtc
tacagttattga
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