Coregonus clupeaformis (lake whitefish): 121586077
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Entry
121586077 CDS
T08357
Name
(RefSeq) beta-1-syntrophin-like isoform X1
KO
K24064
beta-syntrophin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121586077
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Gene cluster
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Motif
Pfam:
Syntrophin_4th
PH_17
PDZ
PH
PDZ_2
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121586077
NCBI-ProteinID:
XP_041758467
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Position
17:complement(21545003..21589742)
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AA seq
530 aa
AA seq
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MAVATVISGNRVQKSGFLEVLVRDRWHKVLANLNEEALTLSCEDLGENENLNGITNGSYR
SNATHPDHTNSPKTAVRTAFTDLQEQVPEAIANRKRCVKVIKQEVGGLGISIKGGKENKM
PILISKIFKGLAADQTQALYVGDAILSVNGVNLRDATHDEAVQGLKRAGREVTLEVKYMR
EATPYVKKGSPVSEIGWETPPPESPRLGSPHSDVPLTPTMSLQGDRRYIPLKMCYITRSM
TTPDPENRQLELHSPDAKHTVVLRCKDTASAQAWFEVMQSATSNLINKVITEVKEHTGRT
GIAGSREIRHLGWLAEKTENEKQQWKPVLVMVTEKDLLLYDSLPRMKASWHSPAHTYPLL
ATRLVHSGPDRGSPQPGVELSFATRTGTRLGIEAHLFRAETCKDLSLWTRHIVTGCHSSA
QMIKEVTTSCMYKGQECRLVIHYEQGFSVLAEQQGEDQVDQGNQNQAKPLLCYPFERLKM
SSDDGVRVLFLDFSGKEGEIQLDLHSCPKPIVFILHSFLSAKIARLGLVA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagctacagtaatttcggggaacagagtacaaaaaagtggatttttggaggtt
ttggtgagggaccgatggcacaaagttttggccaacttgaacgaagaagccctaacgctg
agttgcgaggatctgggagagaatgagaacctaaacggcatcaccaatggatcttaccgg
agcaacgcaactcacccggatcacacgaacagtccgaaaactgcggtgaggacagctttc
acggatttacaggagcaagtgccagaggcgatcgctaacagaaaaagatgcgtgaaagta
ataaagcaagaggtagggggactcggcatcagcataaaaggaggaaaagagaataaaatg
ccgatacttattagtaagatcttcaaaggtctggctgcggatcaaacccaagccttgtat
gtcggggacgcgattctgtcggtgaacggtgtgaacctgcgagacgctacgcatgacgag
gcggtgcaggggctgaaacgagccgggagagaagtgacgctagaagtgaagtacatgcgg
gaagccaccccctatgtgaagaagggttctccggtgtcagagataggctgggagacgcca
ccaccggagtccccgaggctgggtagcccccactctgacgtccccctcacccccaccatg
tccctacagggggacaggaggtacatccccttaaagatgtgttacatcaccaggagcatg
actactccagaccctgaaaacaggcagttggagctgcactctccggatgccaagcatacg
gtggtgttacggtgtaaagacacagcctcggcccaggcctggttcgaggtcatgcagtcg
gcgacctctaacctcatcaacaaggtcatcacagaggtcaaagagcacacaggaagaaca
gggatcgcagggagcagagagatcagacacctgggctggctggctgagaagacagagaat
gagaagcagcagtggaagccagtgctggtgatggtgacagagaaagacctgctcctctat
gacagtcttccacggatgaaggcatcctggcacagccctgcacacacatacccactgtta
gctacacggctggtgcactctggtcccgaccgaggctctccccagccgggcgtggagctg
tccttcgccacacgtacaggcaccagactgggcattgaggcccacctgttcagagctgag
acctgtaaggacctttcactgtggaccaggcacatcgttacgggctgtcactcctctgcc
cagatgatcaaagaagtcaccaccagctgcatgtacaagggccaggagtgcaggctggtg
atccactacgagcagggcttctctgtcctggctgagcagcagggggaggaccaggtggac
cagggaaaccagaaccaagccaaacctctgctctgctaccccttcgaacgcctcaagatg
tcctctgatgacggggtcagagtgctcttcctggatttcagtggaaaagagggtgaaatt
cagctggacctccactcgtgcccaaagcctatcgtcttcatcctccactcattcctctca
gcaaagatcgccagacttggcctggtagcatag
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