Coregonus clupeaformis (lake whitefish): 121586278
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Entry
121586278 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6 isoform X2
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121586278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586278
03036 Chromosome and associated proteins [BR:
cclu03036
]
121586278
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121586278
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121586278
mRNA degradation factors
5'-3' decay
Decapping complex
121586278
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121586278
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121586278
NCBI-ProteinID:
XP_041758795
LinkDB
All DBs
Position
17
Genome browser
AA seq
440 aa
AA seq
DB search
MIYNIKVRERFGDDWKKRLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWE
KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELA
LQVSQITIQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKV
DRVQMMVMDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYE
INLMEELTLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQL
GYSCFYIHAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAET
YLHRIGRSGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHAAN
LDCEVVEEVLKETGCQQGEP
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgatatataacatcaaagtgagagagaggtttggagatgactggaaaaagaggctacag
ctccctcccaaagacaccagggtcagaacctctgatgtgacgtccactaaggggaatgag
tttgaggactactgtctgaaacgggagctcctgatgggcatctttgagatgggctgggag
aagccctcccctatccaggaggagagcattcccatagccctgtcaggacgagacatcctg
gcccgtgccaagaatggaacggggaagagtggggcctacctcatccccatgctggagaga
atagacctgaagaaggactatatacaggctattgtgatggtgcccactcgtgagctggcc
ctgcaggttagccagatcactatccagatcagtaagcacctaggcggagtgaaagtcatg
gccacaacgggcggcaccaacctgcgagatgacatcatgcgcctggacgagactgtgcat
gtggtcatagccacacccggcaggatcctggacttgatcaagaagggcgtggccaaagtg
gatagagtccagatgatggtgatggatgaggcggacaagctgctgtctcaggactttgtg
gtgctcattgaggatatcattagcttcctggccaagggccgtcagatcctgctctactct
gccaccttccccatcagcgtgcagaagttcatggccaagcacctgcagaaaccctatgag
atcaacctgatggaggagctgactctgaagggcatcacccagtactatgcctacgtcact
gagagacaaaaagtccactgtctcaacacgctcttctccaggctgcagatcaatcagtcc
atcatcttctgtaactccacccagagagttgagctgctggccaagaagatcacccagctg
ggctactcctgcttctacatccacgccaagatgatgcaggagtacagaaaccgtgtgttc
cacgacttcagaaatggactctgcagaaatcttgtctgcaccgatctgttcaccagaggt
attgacatccaggctgtcaatgttgtcatcaacttcgacttccccaagaacgccgagaca
tacctgcatcgcattggaagatcagggaggtttggtcacctgggcctggccatcaacctg
atcacctctgaggaccgctttaacctgaagtccatcgaggaccagctggtcaccgacatc
aagcctatccctggcagcatcgacaagaatctctacgtagcagagttccacgccgccaac
ctagactgcgaggtggtggaggaggtgttgaaggagacaggctgccaacagggggagccc
tag
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