Coregonus clupeaformis (lake whitefish): 121586397
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Entry
121586397 CDS
T08357
Name
(RefSeq) splicing factor, proline- and glutamine-rich
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121586397
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121586397
03041 Spliceosome [BR:
cclu03041
]
121586397
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121586397
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121586397
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
121586397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
NOPS
RRM_10
RRM_7
Motif
Other DBs
NCBI-GeneID:
121586397
NCBI-ProteinID:
XP_041758977
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All DBs
Position
17:40643989..40672606
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AA seq
627 aa
AA seq
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MSRDRFNLNVRGNNRGAGFQRRGGAGPGGPMRGGMGNLNNFRQNQHPFQRGPHPGNFGKP
PNQIPQITPQKPLPPTLSQPGAQAIRPPPTPGPALTMKGPVQQQQAAAVAAPAAAAATPV
AAPPAAAATAPAAQPKIQSPPPKPVPPKPTLSSPPPNQIKKPALSSPPPNQINRNQQRPG
PGNANGNGPKSAPAIKKPEPQTQKNTSIETEEAQPPNELRATLSSLRRPGEKTYTQRCRL
FIGNLPNDISDDTFKKLFAKYGEPSEIFINKNKGFGFIRLESRALAEIAKAELDDVPMKG
RPLRVRFATHSAALSVKNLSPFVSNELLEEAFSQFGVVERAVVIVDDRGRSTGKGIVEFA
SKPAARKALDRCNDGVFLLTTSPRPIVVEPLEQYDDEDGLPEKLAQKNHNYHKEREEPPR
FARPGTFEFEYSKRWKSLDDMEKQQRQQVEKNIREAREKLEGEMDDAFHVHQANMIRQDL
LRREEELRRMEEMHSAEMQKRKEMQLRQEEERRIREEEMLRQREIEEQMRRKREEAYRSG
NFMDNRDMRMTGGAMGLADSQFGSPNQKFPMGHQGMAGPNAGGAMMPNEMRNERNFPQGG
RGGMGPTNPGFGRVREEFEGPAKKPRF
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgggacagatttaacctcaacgttagaggaaataatcgtggagctggatttcaa
cgccggggaggtgctggtcctggtggcccgatgcgaggtggaatgggtaacctgaataat
ttcagacaaaaccaacacccttttcaaagagggcctcatcccggtaactttggaaaacca
cccaaccagatacctcagataacccctcagaagccactgccaccaactctttcccagcca
ggcgctcaagcgattcggccaccacctactcctggccctgcgttaaccatgaagggcccc
gtacagcaacagcaggccgctgcggtagcagctccggcggccgcagcagcaactccagtg
gccgcacctccggcggctgcagcaacagcgcccgcggctcaaccaaaaattcagtcccca
cctccgaagcctgttcctccgaaacccacactctcatctcccccaccaaaccaaattaag
aaacccgcactctcatctcccccaccaaaccaaattaataggaaccagcaaagaccagga
cccggcaacgccaatggaaatggacctaaatctgcacccgcgatcaaaaaacctgaacct
caaacgcagaagaatacttcaattgagaccgaggaagcccagcctcccaatgagttgaga
gcaacactgtcctcgctgcgcagacctggcgagaagacatacactcaacgatgccgcctt
ttcattggaaaccttcccaacgatatctcagatgacacattcaagaagctgtttgcgaag
tatggcgagccaagtgagattttcatcaacaaaaacaaaggctttggcttcatacgcctc
gaatcccgtgcattggctgagatagctaaagctgaactggatgatgtgcccatgaaaggc
agaccgcttcgggtgcgctttgcaactcactcagctgcactgtctgtgaagaacttgtca
ccttttgtttccaatgagctactggaggaggccttctcccagtttggagtggtagagagg
gctgtagtaattgtagatgatcgcgggcgctccactggcaagggcattgttgaatttgca
tctaaacctgctgcacgaaaggccctggatcgttgcaatgatggagttttcttgctcacc
acgtcacctcgtccaatcgtcgttgagccccttgaacaatacgatgatgaggatggtcta
ccagagaaactggcacagaagaaccacaactatcataaggagcgggaggagccacccagg
tttgcccgtcctggcacgtttgagtttgaatactctaagcgttggaagtccctggacgac
atggagaagcagcaacgccagcaggtggagaagaacatccgtgaagcccgagagaaactg
gagggagagatggacgatgctttccatgtgcaccaggccaacatgatccgccaagatctg
ctgaggcgtgaggaggagctacgacgcatggaggagatgcacagtgcagagatgcagaag
aggaaagagatgcagctcaggcaggaggaggagcgtcgcatacgtgaggaggagatgctc
cgccagagggagattgaggagcaaatgcgccgcaagcgtgaggaggcctacagaagtggc
aacttcatggacaatagggatatgagaatgactggtggcgccatgggcctggctgacagt
caatttggctcacccaaccagaagttccccatgggacaccaaggcatggcgggacctaac
gctgggggagccatgatgcccaatgaaatgcgcaatgagagaaacttccctcagggaggc
cgggggggaatgggtcctaccaacccagggtttggcagggtccgggaggagtttgaaggg
cctgccaagaagccccgcttttaa
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