Coregonus clupeaformis (lake whitefish): 121586413
Help
Entry
121586413 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121586413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586413
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121586413
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121586413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
121586413
NCBI-ProteinID:
XP_041758999
LinkDB
All DBs
Position
17:41329648..41349047
Genome browser
AA seq
938 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVAMSPPGQSLLDDDLFHQISSGTPTSTTSSSPVPAPYTTENSEDDKK
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSSSSASSGASSGAASSSLGSMATIA
GGGQAITGGNNNSLLGNMGGLLSNSGSYSNATQQQLQQLQQHHQTQQARNSVISSNAPSN
SNPSPSNNILLSSPSASSPANSSTTLTPNTLQQAPSRPSPASTLGLGLGLGLGKGGMSGS
PAVSQMSGLGLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKISSVSTSSTN
SSTVGLVSGNGVSDRSAGLLGSSVGVSGGILGLSGLSSGQSAVQGPPLVAPSPIGGGLAP
GSSLGAIGNIGGNSGSGAPSNSVGIVGGSAAVARLPGGQKQNGSTSYSAVVADSTPDSAL
NSTSKLQSSQPSSLTSTTNQPKDSGPSLLGSSSSYIESKPPGSSMLNGPLSYTQSSESMK
PQEPLSTVKSMAEQAALGSGMEGEMPALHLTTDIFPSATAPPGPPSAPQQPSLSEVSIPP
SLGVCPLGPVPLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPP
HSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI
TDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggaaaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagat
cagatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatagtggagcgagagaccaagaca
aaggcgtactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggac
cagtttgagagcgaagtggagtccctctcagtccagactcgcaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgctttatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggattccatc
cgcaagatcaaggacgacgtggagtactacatggactcgtcgcaagaccccgacttcgag
gagaacgagttcctctacgacgacctggatctggaggaactccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcgctggtggccatgtccccaccgggc
caatcgctcctggacgacgatctcttccatcagatctccagcggcacgcctacctccacc
acttcctcctcgcccgtccccgccccttacactacggagaactctgaagatgacaagaaa
aggggacgttcgacagacagtgaaatcagtcagtcgcctgtcaagaatggcaacccctct
tcgtcgttatcttcctcctcctcatcttcctcctcgtcctcctcctcttcatcatctgcc
tcctcgggagcctcctcgggagccgcctcttcctcgctgggctctatggcgaccatcgcc
ggaggcggccaggccatcactgggggcaacaacaacagccttctgggcaacatggggggt
ctcctctccaactctggcagctacagcaacgccacccagcagcagctgcagcaactgcag
cagcatcaccaaacccagcaggccagaaactcagtcatctcctccaacgccccctccaac
tccaaccccagcccgtcgaacaacatccttctctccagcccctccgcctcctcgcccgcc
aactctagcacaaccctcacacccaacaccctgcagcaggctccgtcaaggccttctcct
gcctccaccttggggctcgggttgggcttgggccttggtaaaggcggcatgagtgggtca
ccggccgtcagccagatgtcgggccttggcctgtcagggatgccggcgtccttaaacacc
atggccgggctcctggcgggctccacttcggccccctacgccacggcagcagcaggctcc
ggaaccatcggaagccccctagcagggaaaatcagcagcgtgagcactagcagcactaac
tccagcacagtgggactggtgagcggaaacggcgtcagcgacagatccgcaggcctgttg
ggctcttcagttggtgtcagcggtgggatcctgggcctcagtggccttagctcagggcag
tcggcagtccagggccctcccctggtggcccccagtcccataggaggaggcctggcccct
ggaagcagcctgggagccataggaaacattggagggaactctggttcaggagcaccaagc
aacagtgtgggcatcgtaggaggaagtgcggcggtcgcaaggctgcccggtggacagaag
cagaatggtagcactagttacagtgctgtagtagcagacagcacaccagattccgccctc
aacagtaccagcaaattacaaagcagccaaccctcgtctttgacctccaccaccaatcag
cctaaagacagtggccccagcctcttagggtcctcgtcgtcctacattgagagtaaacct
ccaggcagcagtatgctcaacgggccactctcctacacacagtcctctgaaagcatgaag
ccccaggagcctctgagcactgtgaagtccatggccgaacaagcggcactgggctcagga
atggagggagagatgcccgctctgcacctcaccacagacattttccccagcgctacagcc
cccccggggcctccctcggccccccagcagccctcgctctcagaggtcagcatcccccca
tcgctgggtgtgtgcccgctggggcccgtgcccctgtccaaagaccagctgtaccagcag
gccatgcaggagtcggcctggacacacatgccccatccctccgactcagagaggatcagg
cagtacctgatgaggaacccgtgccccaccctgcctttccaccaccaggtgccgcccccc
cactccgactctgtagagttctaccagagactgtccacagagacactgttcttcatcttc
tactacctagagggcactaaggcccagtatctggcagccaaggccttgaagaagcagtcg
tggcggttccacaccaagtacatgatgtggttccagaggcacgaggagcccaagaccatc
acagatgagtttgagcaggggacgtacatttactttgactacgagaagtggggccagcgg
aagaaggaaggattcacgtttgagtacaggtaccttgaagaccgagacctccagtga
DBGET
integrated database retrieval system
