Coregonus clupeaformis (lake whitefish): 121586438
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Entry
121586438 CDS
T08357
Name
(RefSeq) glutamate receptor ionotropic, kainate 5-like
KO
K05205
glutamate receptor, ionotropic kainate 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121586438
04082 Neuroactive ligand signaling
121586438
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121586438
Ion channels [BR:
cclu04040
]
Ligand-gated channels
Glutamate (ionotropic)
121586438
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Motif
Pfam:
ANF_receptor
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
121586438
NCBI-ProteinID:
XP_041759046
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Position
17:complement(42236005..42351704)
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AA seq
1080 aa
AA seq
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MPALPALLLSIYFLLLLLTMAPLSFTQAPALSSVRMAAILDDQSVCGRGERLALALAREN
INSIFEGSSRARVEVDIFELQKDSQYETTDTMCQILPKGVVSVIGPASSPASGSTVSHIC
GEKEIPHVKIGPEETPKLPYLRFASVSLYPSNEDLSLAIGAILRSFSYPTASLICAKAEC
LLRLEELVRRFLISRETLSIRMLDESLDPTPLLKEIRDDKVATIIIDANASISYLILRKA
SELGMTSAFYKYILTTMDFPLLQLDDVVDDLSNIVGFSMLNSSHPFYLEFIRSLNLSWRE
GCDLSPYPGPALSSALMFDAVHVVVGAVRELNRSQEIGVKPLSCSTPQIWQHGTSLMNYL
RMVEYDGLTGRVEFNSKGQRTNYTLRILEKHRGGHKEIGIWYSNNTLAMNSTSLDINVSE
TLANKTLIVTTILENPYVMRKSNYQELQGNDRYQGFCVDMLRELSDMLKFSFRIKLVDDG
LYGAPEPNGSWTGMVGELINRKADLAVAGFTITSEREKVIDFSKPFMSLGISILYRVHLG
RKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEWYNPHPCLIGRKDMLENQY
TLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEV
PIESPDDLADQTNIQYGTIQGGSTMTFFMNSRYQTYQRMWNYMHSKQPSVFVKSTEEGIA
RVVNSKYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFKEEITLGVLQLA
ENNRLEILKRRWWEGGQCPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAIMEFVWST
RRSAETDEVRPHFCPGRNHRHPPVSVCQEMLTEFRNAISCKKSSRSRRRRPLASTGGVLR
HPSRLQLGVPRPIRLVREMRLSNGKLYSSSGHLTGGGGAAGGVCGAIGGGPSDMGPGPQR
LLEDPLGANTTTPPPPPEAATAPPSRSCAHVRICQECRRIQSLRSASSCSRIPPHLGPHS
SLSLPRLPPPPPPSSTNTDSEGGGCGTVSPKRPKPKPTPPPRPLPPAKTPTTDLLLGKQD
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgccggctctgccagcactgctgctgtcgatttacttcctcttgctgttgctgaccatg
gccccgctctcattcacccaggctcccgcgctctcctctgtcagaatggcggccattttg
gacgaccagtcggtgtgtgggcgaggggagcggctagcactggccctggccagggagaac
attaacagtatctttgagggctcttccagagcccgggtggaggtggacatcttcgagctg
cagaaggactcacagtacgagaccaccgataccatgtgtcagatattgccgaagggggtg
gtctctgtgattggccccgcctccagtcccgcgtcagggtcaactgtcagtcacatctgt
ggggagaaggagatccctcatgtgaagataggcccggaggagacgcccaaactcccatac
ctccgcttcgcctcggtcagcctctaccccagcaacgaggacctgagcctggctataggg
gccatcctccgctccttcagctatcccaccgccagcctcatatgcgccaaggcagagtgc
ctgctgcgattggaggagctggtgcggcgcttcttgatctcccgggaaacactgtccatt
aggatgctggacgaaagcctggaccccacccccctgctgaaggagatcagagatgacaaa
gtggccactatcatcatcgacgccaatgcttccatctcctacctcatcctcagaaaggca
tcagaactggggatgacatcagcgttttacaagtacatcctcaccaccatggactttccc
ctgctgcaattggacgacgtggtggatgacctgtccaacatcgtgggtttctccatgctc
aacagcagccatcccttctacctggagttcatcaggagtctcaacctgtcctggagggag
ggctgtgacctcagcccttaccccggcccagcgctctcgtcggctctcatgtttgatgct
gtgcatgtggtggtgggggcggtgcgtgagctcaaccgaagtcaggagattggagtgaag
ccgctcagctgcagcactcctcagatctggcagcacggcactagcctgatgaactacctg
cgcatggtggagtatgatgggttgaccggcagggtggagttcaacagcaaaggccagagg
acaaactacaccctgaggatcctggagaagcaccgtgggggtcataaagagatcgggatc
tggtactctaacaacacgttggcgatgaactccacgtctctggacatcaacgtgtcggag
acgctggctaacaagacgctcatcgtcaccaccatattggagaacccgtacgtgatgcgc
aagtccaactaccaggagctgcaaggaaacgaccggtaccagggtttctgtgtggacatg
ttaagagagctgtcggacatgttgaagttctccttcaggatcaagctggtggatgacgga
ctgtacggagcgcctgaaccaaatggatcctggacaggcatggtgggagagctcatcaat
aggaaagcagacttggcggtagctgggttcaccatcacctcagagagggagaaggttata
gatttctccaaaccgttcatgtctctgggcatcagcatcctgtacagagtccatttggga
cggaagcccggttatttctccttcctggacccgttctcgccggccgtgtggctcttcatg
ctgctggcctacctggctgtcagctgtgtgctcttcctagccgccaggctgagtccgtat
gagtggtacaacccccacccgtgtctgatagggcgaaaggacatgctggagaaccagtac
accctgggcaacagcctgtggttccccgttggaggcttcatgcagcagggctctgagatc
atgccccgcgccctgtccacacgctgcgtctccggggtctggtgggcgttcactctaatc
atcatctcctcctatacggccaacctggcagccttcctgaccgtccagaggatggaggtg
cccatcgagtcgcctgacgacctggctgaccaaacaaacatccagtatggcaccatccaa
ggaggctccaccatgaccttcttcatgaactcgcgctaccagacgtaccagcgtatgtgg
aactacatgcattccaagcagcccagtgtgtttgtgaaaagcacggaggagggcatcgcc
cgtgtggtcaactctaaatatgccttcctgctggagagcaccatgaacgagtaccaccgc
cgcctcaactgtaacctcacccaaataggaggtctgctcgacaccaagggctacggcatc
ggcatgcccctgggctcaccgtttaaagaggagatcactctgggggtgttacagctggca
gagaacaacaggctggagatcttgaagaggaggtggtgggaaggggggcagtgccccaag
gaggaggaccaccgagccaagggtctgggcatggagaacatcgggggtatcttcgtggtg
ttgatctgtggcctcatcatcgccgtgttcgtggccatcatggagtttgtgtggtccacc
cgccgctcggcagagacagatgaggtacgccctcacttctgccccggccgaaaccacaga
caccctccagtgtcagtgtgtcaggagatgctgactgaattccgcaacgccatctcctgt
aagaagagctcacgctctcggcgccggcggcccttggccagcactggcggcgtcctgcgc
caccccagccgcctccagctgggtgtcccgagacccatccgcctagtccgcgagatgcgc
ctcagcaacggcaagctgtacagcagctcgggccacctgacgggtggcgggggagcagca
gggggggtgtgcggggccataggggggggaccgtcagacatgggtccggggccacagcgc
ctcctggaggacccgctgggtgccaacaccacaacgccccctcccccgcccgaggctgcc
acggcacctccctctcggagctgtgcccacgtgcggatctgccaggagtgccggcgcatc
cagagcctgaggtcggcatcgtcctgctcacgcatcccgccccacctcggtccacactct
tccctgtccctgccccgcctccctccacccccgcccccctcctccaccaataccgacagc
gaggggggcggctgcggcacagtgagccccaagcgccccaaacctaagcccacgccccct
ccacggcccttacccccggccaagacgcccaccacagacctgctgctggggaaacaagac
tga
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