Coregonus clupeaformis (lake whitefish): 121586443
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Entry
121586443 CDS
T08357
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586443
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121586443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
121586443
NCBI-ProteinID:
XP_041759057
LinkDB
All DBs
Position
17:complement(42464618..42503349)
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AA seq
2570 aa
AA seq
DB search
MKPIKKQGRRLPPSTRAKGGKRRGAGDNGEKRDSDENKDRSPKSQTSPQTSSHSESSQEE
SVTLKARATPERDDHREGPRLPETAAAAAGSLPGKSEDSHPGSVKSLSTHSTDSSSSTAS
AANSPNPSSNRKTATFKARVPKKKYTSEHCAAAAAAANHGNPGTPPLSSNSAHCGSNTGS
QSSGFSSAASEGGSLTDINSQIRRPAEDYTTTIAPSQDRDSTPGPPPIGDRDRRVPEGGR
EISPSPVRCSSTDTASEHDLDVSEPHRSNSHHTNPTTEAHTLALVQCSTPHTPTPQSLSD
ALADALAKGLKNQRVLARQARRRSGKEEEENGGGGRESMDSVFRAGVVRRVSGEHGSLEV
QLNGEKELYRYPFREGAQGPVDIIMDAPPPGSQAVPIGTPVCVPFGGNEDSGTTEAQRQW
YREGLVTQVDTHPAVSYPYRVLLEDRAPPGDEEGDGSVGTPTAVWVSRQSLRLLVPPWDL
DLGPSGGGREESNAAAERGREREREREDRDEIEVEQELCRLSRGMGLSATVTGSVLGRLS
YPGTAPASSSSSTVSSPVTPASVLSLVPGREWEREKDLMEREREIKRKQERDNRERAKQH
HHFMPLTPEEDIEVSNFSMVPMGAAGGEVKALAVSQHRHILSKPPPGYPSPHLSVVRGLG
GTPLVGPHLALNHHPPPSPTVLLGLESGTLAVGAAVIATPQLPPLPPLSSSSSSSSRGSL
DKPPSSNSSSHGASGGGGGSCSGSASSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGK
QWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRERGGASSTGTLTPSDLRLGGG
RTSSEFDWDNTSRDSSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATMLVSLGSSR
SGTPSFSPISNQSPFSPTPSPSPSPLFVFRPATFSPITAPPSLTPRRHRHLSGTKIGTPG
SERERHLSGIVPTFQTNLTFTVPMSPSKRKLDALPPPLPLSAQDYAKPDQQLGETIGLSP
AAFRVLSPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPLPQDPSPRRI
VPLRDSPVIVRNPDVPLAKFTDGPLGRRGGGGRSSREHIQPLHLATGLQAPVPINGAATN
GAVLLRNPASTLVLVTSSQSLIPAVAGRPAHSSPALSGGSASIFSTGSALSSSGSGGREW
ERKPGGHQDAIGGALPQPVACHPSPTALLPLILPAESPHPAPRKDIIIGRPGTVWTNVEP
RSVPVFPWHSLVPFLEPSQSSTAAQPADGQQLVNQSKEPRCGVALVSDGWVGPPDAERGS
PSCPPPSSNDNNPPAERAERGGADSETESDADDPFFPGVANDPAPSTGPIKRRTQSLSAL
PKDGERKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQ
KYHDLAFQVKEAHFKAHPDWKWCNKDRRKSISEGRETPGAKETRERSMSESTEPESGSQG
MEVKGAAGPDWPGGSERCVGANSGQLPRPRAFSQSAVHSLERRERARDLEKLCREGAGSF
RSRPPTLSLAQCGASEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTDSDED
EPDGQRAFQPVVRSSLPYATSTSHPDSHSDSTKGKTGGSTGESSERKRKRGMEGGEEGSG
ESKRGGGGGGQVPSNSIPGSAPNTPALDYGLTQVLGAVRMAPTMVTNVVCPIASMPIPIT
SKPMEGPIAFSALPGEKKATLLIGGPGAGGGPITAGGGYLSSSSPNPVSVGPGGLQVTSL
VLGGAFPNQSIQLIAPPQPLLSPTHSTLPLPLPLLQPQFLPAASLTPAGGAKPGLTQVQY
ILPILSSVSANPKSPSPQLTQQPTGVLTLPSTPPTHVSLANGIHSGAGAGIRYAAVGGVS
PGARVQAQSPVLQSKMLVPMATVRTGSTPPQPISLVAPPLPVQNGALPGNKIIQIAPMPM
VQTNVHPAGALHPGGPFPVSMATATVMTPGIKPPQTVLLTSPPTRITYVQSSTGVVSTAT
VQAPLSPGPGYLPSSLRTLGFTTIAPAGQTLMQPLVAGQPPLLAPALSPGAPGTGRQLLT
AIYPAPSVTLAPGMVSITSVPPNLAQEVSGQSSLLAVGVQGSKVTQSHEEGMPHLTAEME
HKPQVEGQAQRKTKTEIKKERIKIEKMMEDVEAHSQPGANSMGTSSSNIPTGNEEDGGRA
SHMKEENTDDDRDYAREKQTDVDGERERGIKKERGTPEPEESREAEDWPHEGHNKGDSGN
GGHSKEAGPREPLHPPTGLDPPLPPSQTDRNAPPSAKKTKFRPPPLKKPSDSVEKVLLGS
YFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRRNSTDLDSSAEDPSSPRRK
TAARSRLSSCSSEPNTPKSEAKCEGDIFTFDRAGAESEDVLGEMDRVPYSSLRRTLDQRR
ALVMQLFQEHGFFPSAQATAAFQARYSDTFPTKLCLQLKIREVRQKIMQTATPGTPGISE
PGGSTTGVMGSTDSACAANSSSNTNTRDGTGTEPGERGQSPEEPRCMGKL
NT seq
7713 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgattaaaaagcaaggaaggcgccttcccccgtcgacccgggccaaagggggg
aagagacggggggcgggggacaatggggagaaaagagactcggacgagaacaaagatagg
tcccccaaaagtcagacctcaccccaaacctcatctcactcagagtcttctcaggaggag
tcggtgacactcaaggcgagggccacgccagagagggatgaccacagagaggggccccgg
ctcccagagacagcggccgcagcagcagggtccctccctgggaagtcggaggactcccac
ccagggagcgtcaagtcgctgagcacccacagcacagacagcagcagcagcaccgccagt
gctgccaacagccccaacccctcgtctaaccgcaagacggccaccttcaaggcccgcgtc
cccaagaagaagtacacctctgagcactgtgctgccgccgctgccgccgccaaccacggc
aaccccggcacgcctccactgagcagcaatagtgctcactgtggcagtaacaccggaagt
cagtcgtcgggcttttcttcggcagcgagtgagggcggttcgctcactgacatcaacagt
cagatcaggagaccagcggaggactacactaccactatagctccatcacaggacagggac
agcacacctggaccccctcccataggagacagagataggagagtcccagagggaggcaga
gaaatctcccccagccctgtccgctgctcttctacagacacagccagcgaacacgacctg
gatgtgagcgagccacaccgctccaactctcaccacaccaatcccaccaccgaagcacac
accctagccctggtgcaatgtagcaccccacacactccgaccccacagagcctgtcggac
gcgctagctgacgccctggccaaaggtttaaaaaaccagcgggtgctagccaggcaggct
aggagaaggagtggaaaagaggaagaggagaacggaggaggggggagggagagcatggac
tcagtgttccgagcgggtgtggtgcggagggtgagcggcgagcatggcagcctggaggtg
cagctgaacggcgagaaggagctgtaccggtacccgttccgtgagggtgcccaggggcca
gtggacatcatcatggatgccccgccgcctggctcccaggccgtgcccatcggcacccct
gtgtgcgtgcccttcggaggtaacgaggacagcggcaccacagaggcccagcgccagtgg
taccgagagggcctggtaacccaggtggacacccacccggctgtgtcctacccctataga
gtgttgttggaggatagagcgccgccaggggatgaggagggggatggcagtgtgggcact
ccgacggctgtgtgggtgtcccgtcagagcctccgcctgctggtgcccccctgggacctc
gacctgggaccctccggaggggggcgagaggaaagcaatgccgccgccgagagagggaga
gagagggagagagagagagaggacagggacgagatagaggtggagcaggagctgtgtcga
ctcagccgtgggatggggctcagcgcgactgtgactgggtccgtgttggggaggctttca
taccctggaacggcccccgcctcctcatcttcctctactgtcagctcccccgttacccct
gcctcggtgctgagtctggtgcccggaagagaatgggagcgagagaaggacctgatggag
agagagagggagatcaagaggaaacaagagagagataaccgagagagggccaaacagcac
caccacttcatgcccctgacccctgaggaggacatagaggtgtccaacttcagcatggtg
cccatgggggcagcggggggggaggtcaaggccctggcggtgtcccagcacaggcacata
ctctccaagccgccccctggctaccctagcccccacctgtccgtggtccggggcctcgga
ggcactccgctggtgggcccccacctggccctcaaccaccacccccctccctcccccacg
gtgctactgggcctggagtcgggaacgctggcagtgggggcggccgtcatcgccacccct
cagctgccccctctgccccccttgtcctcctcgtcctcctcgtcctcccgcggctccctg
gataagccgccctcttcaaactccagctcccacggtgcatctggaggaggtggaggctcg
tgctcgggttcggcgtcctcatcacgctcccgcaccccgctcacggcagcccagcagaag
tacaagaagggcgacgtggtgtgtacccccacaggcatccgcaagaagttcaacggcaag
cagtggaggaggctgtgctccagagagggctgctctaaggagtcccagagaagaggctac
tgctcgcgtcatctctccatgagaactaaagagatggaggccagcggagggggcagagaa
cgtggcggggccagcagtacgggcaccctaaccccgtcagacctgagactgggcggcggc
cggaccagttcagagttcgactgggacaacacgtcgcgagacagcagcgaagcgagcagt
aggggaggggattcacgcccccgcctggtcctgccctcgctcctgccccaggacttatca
cgcttcgactttgatgagtgcgaggcggccaccatgctggtgtctctgggcagctcccgc
tcgggcacgccctccttctctcccatctccaaccagtcgcccttctcgcccacgccgtcg
ccctcgccttccccgcttttcgtcttccgcccggccaccttcagccccatcacggcgccg
ccttcgctcacccctcgccgccaccgtcacctgagcggcactaagattggcacgccgggc
tcggagcgtgaacgccacctgtcgggcatcgtacccaccttccagaccaacctcaccttc
accgtgcccatgagccccagcaagcggaaacttgatgcccttcctccgcccctgcccctc
tctgcccaggattacgctaagcccgaccagcagttaggggagactataggcctcagccca
gctgccttcagggtgctctctcctcagagccagcccaccactccctcctccctctccttc
ccccggccgcggagcgccaccagccgccccccgtcctccgccgcctccacccccccaccc
atgctggtgtcccccacccctccctcccccctgccccaggaccccagcccccgccgcatt
gtgcccctgcgagactcccctgtcatcgtgcggaaccccgacgtccccctggccaagttc
acagatggacccctggggaggaggggaggagggggccgctcctccagagagcacatccag
cccctgcaccttgccaccggcctccaagcacccgtgcccatcaacggcgccgccaccaat
ggagcagtcctcctgcgaaaccccgcctccaccctggtccttgtaacctcctcccagtcc
ctgatcccagccgtcgccggacgccctgctcactccagcccagccctcagtggtggctcc
gcctccatcttctctactggctccgccctctccagctctggatcaggcggtagggagtgg
gagaggaagcccggcgggcaccaggacgccattggaggggcactgccccagccggtagcc
tgccacccctcgccaaccgccctgctgccacttatcctaccagccgagtcccctcaccct
gcaccccgcaaggacatcatcattggacggcccgggacagtatggaccaatgtggagccc
cggtcagtgccagtgtttccttggcattcattggtccctttcctggagcctagccaatcg
agtacggctgcccagcccgctgatggccaacagcttgtcaatcagagcaaagagcctcgt
tgcggggtggccctagtgagtgacggatgggtgggtccaccagacgcagagcgagggtct
ccatcctgcccaccaccctcctccaatgacaacaaccccccagctgaaagagcagaaaga
ggtggagccgacagcgagacagagagcgatgcagacgacccgttttttccgggtgtagcc
aatgatcctgccccgtctacgggccctatcaagaggcgcactcagtccctcagtgccctt
cccaaagatggagaaagaaagagggaaaaggaccacattcggcggccaatgaacgcgttc
atgatcttcagcaagcgtcaccgggcgctggtgcaccagaggcaccccaaccaggacaac
cgcacggtcagcaaaatcctgggcgagtggtggtacgccctggggcccaaagagaagcag
aagtaccacgatcttgccttccaggtgaaagaggctcacttcaaggcccacccagactgg
aagtggtgcaacaaggacaggaggaagtctatctctgagggccgagagaccccaggggcc
aaagagacacgcgagaggagcatgtcggagagcacagagcctgagtcagggtctcagggc
atggaggtgaagggtgcggcaggcccggactggcctgggggctctgagcgttgtgtgggg
gccaacagtggtcagctccctcgcccccgggccttttctcagagtgcagtacacagcctg
gagaggagggagcgggctagagatctggagaagttgtgtcgagaaggggcaggctcattc
cgaagccgcccccctactctctccctggcacagtgtggggccagcgaggacgtgaccagc
gatgaggagcgcatggtcatctgtgaggaagagggggacgatgatgtcatggaggactcg
tgccctgagggatccatagacctcaagtgtaaagagagagtgactgacagtgacgaggat
gagccggatggacagcgagccttccagccagtggtccgctcctctctcccctatgccacc
agcacctcccaccctgactctcactccgactctaccaaggggaaaacaggggggagcacc
ggagagagctctgagaggaagcgaaagcgagggatggagggaggagaagagggaagtgga
gaatccaaaagaggaggaggaggaggggggcaggttccctctaattccatccctggatcg
gcgcccaacacccccgctctggattatggactcacccaggtgctcggtgcagtccggatg
gcccccaccatggtgaccaacgtggtatgccccatcgccagcatgcccatccccatcacc
agcaagccaatggaaggccccatcgccttcagtgccctccccggggagaagaaagccacg
cttctgattggaggaccgggagcaggaggcgggcctatcacagcagggggtgggtacttg
tcctcgtcctctcccaatcccgtgagtgtggggccgggggggctgcaggtcaccagtcta
gtgctgggaggagctttccccaaccagtctatacagctcatagccccgcctcagcctctc
ttaagccccacccacagcaccctgccactccccctccccctgctgcagccccagttcctt
cctgccgcctctctcacccctgctggcggtgccaagcctggcctcacccaggtgcagtac
atcctgcccatcctgtcttctgtcagtgccaaccccaagagcccctccccccagctaacc
cagcagccaaccggcgtcctcacgctgccctctactccacccacccatgtctccctggcc
aatggaatacattcgggggcaggagcgggaataagatatgccgcagtgggaggggtcagc
cctggagcaagagtccaagcccagtctccagtcttacagagcaagatgttggttcccatg
gcaacagtgagaacaggctctactcctcctcagcccatctccctcgtggcccctcccctt
cctgttcaaaatggtgctcttccaggaaacaagatcatccagattgcccccatgccgatg
gtccagacaaatgtccaccctgctggagcattgcatcctgggggtcccttccctgtatcc
atggcaacagccactgtgatgactccgggcatcaaaccccctcagaccgtgttgctgacc
tcgcctccaacaaggatcacttatgtccaatccagcaccggagtggtctccacagcaacg
gtccaggcccctctctctccaggcccaggctacctgccgtcgtccctgagaaccctgggc
ttcaccaccattgccccggccggccaaaccctgatgcagcctctcgtagcgggccaaccg
cccttgctagccccagccctttcccctggagccccggggaccggacgtcaactcctaacc
gccatttacccagccccgagcgtcaccctggcgccaggtatggtttccattacctccgtg
ccccccaatttggctcaagaagtgtccggccaatcatcactcttggctgttggcgtccag
ggttcaaaggtgacccagtcacatgaagagggaatgccacacctgactgcagagatggaa
cacaagccacaggtggagggccaggcccaaaggaagaccaagactgagataaagaaagag
cgcataaagatagagaagatgatggaggatgtcgaggcacatagccaacccggtgctaac
tcaatgggtacgtccagcagcaatataccaacagggaatgaagaagatggtggtcgagcc
agccacatgaaagaagagaatacggacgatgacagagattatgccagagagaaacagaca
gacgtggatggagagagggagagggggataaagaaggagagggggacgcctgaaccagag
gagtccagggaggcagaggattggccccatgagggccacaacaaaggggacagtggcaac
gggggccacagcaaagaggctggaccgagggaacctctccaccctcccacaggactggac
cctcctctgcctccctcacagactgacaggaacgcgcccccctcagccaagaagaccaaa
ttccgcccaccgccactcaaaaagccctctgactccgttgaaaaggtcctgttggggtcc
tatttcgaggagcgctttgccgagctgccagagttcaggccagaagaggtgctgccctct
cccaccctccaaagtctggccacctccccccgagccatactgggcagctaccgcaagaag
aggaggaactctacagacctggactcgtcagcagaggaccccagctctcccaggaggaag
actgcagctcggagccgtctctccagctgcagctcggagcccaacacaccaaagagcgag
gccaagtgtgagggggacatcttcaccttcgacagagctggtgctgagtctgaggatgtc
ttgggggagatggacagagtaccgtactcctctctccggagaactttggaccagcgcagg
gctctcgttatgcagctcttccaggaacatggctttttcccttcagcccaggccactgca
gccttccaggcgcgctattcggacaccttccccaccaaactgtgtctgcagctgaagatc
agggaggtgaggcagaagatcatgcagacagccacacctggaacccccggaatctctgag
cccggcgggtcaacaacaggggtcatggggtcaacagactctgcctgcgctgccaatagc
tcctccaataccaacactcgagatggtacagggacggagcccggagaaagagggcagagt
cccgaggagcccaggtgcatgggtaaattgtag
DBGET
integrated database retrieval system
