Coregonus clupeaformis (lake whitefish): 121586453
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Entry
121586453 CDS
T08357
Name
(RefSeq) RNA-binding protein with serine-rich domain 1 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121586453
03015 mRNA surveillance pathway
121586453
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586453
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121586453
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_7
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
121586453
NCBI-ProteinID:
XP_041759082
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Position
2:complement(3949386..3958808)
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AA seq
282 aa
AA seq
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METWLVLVTSPVRRKEHMEDKAKERVKEKTGSTKKRAGRGREKEKGCKGRGSTGSSRSGS
SSSSGSSSSSGSSSSSASSRSGSSSSRSLSSSSSSGSPNPSRRRHNDRQRSRSKSKSSVK
KDDKERRRRSPSPRPTKVYLGRLTRNVIKEHIQEIFGTYGKIKMIDIPVDRLLPHLSKGY
AYVEFETADEAEKALKHMDGGQIDGQEITATAMLAPRVIRPPPRRLSPPRRMPPPPPMWR
RTPPRMRRSRSPRRRSPVRRRTRSHSPGRRRHRSRSSSNSSR
NT seq
849 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttggttagtgttagtgacaagtccagtcaggagaaaggagcatatggaagac
aaggccaaagagcgagtaaaggagaaaacgggttccaccaagaaaagagctggcaggggc
agggagaaggagaagggatgcaaaggacgtggctccactgggagcagcaggtccggctcc
agtagcagctctggctccagttcttccagcggctccagttcctcctctgcctccagccgc
tccgggtcttccagctcccgttccttgagctcatccagctcctcagggtcacccaacccc
agtcgccgccgccacaacgaccgccaacgctcacggtccaaatccaagtcatcagtgaaa
aaggatgacaaggagaggcgtaggaggagccccagcccccgacccaccaaggtgtacctg
ggccgcctcaccagaaacgtcatcaaggaacacatccaggagatcttcggcacatatggc
aagatcaagatgattgacatacctgtggacaggctcctcccacacctgtcgaaaggctat
gcctacgtggagtttgagacggccgatgaggccgagaaggctctcaaacacatggatgga
ggtcagattgatggacaggagatcacagcaactgccatgctggctcccagggtaatacgc
ccgccccctcgcaggctctccccccctcgcaggatgcccccaccaccccctatgtggcga
cgcaccccaccccgcatgagaagatctcggtcaccacggagacgctctccggttcgccgc
agaactcgctcgcactcccccggtcgcagacgccaccgctcacgatccagctcgaactcc
tccaggtag
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