Coregonus clupeaformis (lake whitefish): 121586456
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Entry
121586456 CDS
T08357
Name
(RefSeq) tapasin
KO
K08058
TAP binding protein (tapasin)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121586456
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Gene cluster
GFIT
Motif
Pfam:
Ig_3
V-set
ig
I-set
C1-set
Ig_2
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
121586456
NCBI-ProteinID:
XP_041759083
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Position
17:complement(42914334..42918458)
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AA seq
442 aa
AA seq
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MANISTIYKLSFLAFTYFIHVYGTSCPVLECWFVQEKPGRGGGFPAAMMQEKALLYINTD
PESEETKSQQGPSADINHDRVYYITDPAATLCSSSLHPPEGSVHKPQCEINPFMPQPSTV
QWAVPLTDSAHSPIYLQADWYSAALQGLDRQLGLSSVMRAPTATKEPAVVLSVSSRTPLV
RSRLGEPVVLDCGFWMEDTSPLSVSGFAVEWRYQFRGDGRLVLAYDGKSDRFAETQEEGA
GLDFTALHETGNASLILQEAQVRHTGTYICTVYLPYLLAQVAVELEIVEPPSLSIFPSPL
PLSVPGQVVKVQCEASGFSPLSLEFHWELTGLDGRVRPLGQGSVTGHRQGPDNTYSQTTR
LELDSAKLDLGRGGKVTCVAVHPGGTRRASVTLNVIGVSGPSIEDSMAMVAVALGLYGLI
KIVSWTFSSGSDDTNSQEKKVK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggccaatatatcaacaatttacaagctatcgtttctagcctttacttacttcatacac
gtctatgggacaagctgtccagttctggagtgctggtttgtccaggagaaaccaggtcga
ggtgggggattccctgctgcaatgatgcaggagaaggcactactgtatatcaatacagac
ccagagagtgaagaaaccaagtcacagcagggaccatctgcagacatcaaccatgataga
gtctactacatcactgacccagcagccaccctctgcagttcctctctgcacccaccagag
ggctcagtccataagccacagtgcgagatcaaccccttcatgccccaaccctccaccgtc
caatgggcagtcccactcactgactctgcccacagtcctatctacctacaagctgactgg
tactctgccgccttgcagggccttgacagacagctgggcctgtccagtgtcatgcgtgct
cccacggcaaccaaggaacccgctgtggtgctcagtgtgtccagtagaacgcccttggtc
cgttccagactcggggaaccggtggttctagactgtgggttctggatggaggacacttct
cctctctctgtctctggcttcgctgtggagtggcgctaccagttcaggggcgatggccgt
ctggtcctggcctacgacggtaagagtgaccgatttgccgagacccaggaagagggagcg
gggctagacttcacggctctgcacgagacaggaaatgcatcactgatcctgcaggaagct
caagtgcgccacacaggaacctacatctgtacggtgtacttgccctatctcctggctcag
gtggctgtggagctggagattgtagagccgccgtccctctccatcttcccctccccactc
cctctctccgtgcctggccaggtggtgaaggtgcaatgcgaggcgtcaggattctccccc
ctctccctggagttccactgggagttaacagggctggacggtagggtcaggcccttgggt
cagggcagcgtgacaggccacaggcagggcccagacaacacctacagccagaccactcgt
ctggagttagactcagccaagctggaccttggccgtggagggaaggtcacctgtgtggcc
gtccaccctggaggcacccggcgggccagcgtcaccctcaatgtcattggtgtaagtggt
ccctctattgaggactctatggcgatggttgccgtggccctggggctctatggtttgatc
aagatcgtctcctggacatttagctctgggtccgatgatactaactcacaagagaagaaa
gtgaagtaa
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