Coregonus clupeaformis (lake whitefish): 121586470
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Entry
121586470 CDS
T08357
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586470
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
EARP complex
121586470
Endosome - Golgi transport
Tethering complex
GARP complex
121586470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
CoV_NSP7
MscS_porin
DUF5740
DUF3440
Cep57_MT_bd
DUF1664
COG6_N
DUF4795
ATG16
Motif
Other DBs
NCBI-GeneID:
121586470
NCBI-ProteinID:
XP_041759113
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All DBs
Position
17:43237666..43247499
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AA seq
724 aa
AA seq
DB search
MADGAVTGAMSDVNTTVNSTANAMAYLQDEMKPDTDAMAPLNLGDLDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKHVEDELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSHLSQLVDELVVPG
AMIQIILESPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGTVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSALDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITNKRTIPALDKYWEAVLELLWPR
FELILEMNIQSIRNTDPQKLGVLDTRPHYVTRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLNVLMERAADDSKEVEGFQQLLQARSQE
FIEEILSSPFGGMIAFVKESEALTEKGQLDRLKNDEARITQLVRGFSSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLSQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggagcagtgactggtgctatgtccgatgtaaacacaactgtcaactcaacg
gcgaatgccatggcatatttacaagatgagatgaagcctgacacagacgccatggcccct
ctcaacctgggtgacttggacttgaccacagatgagttcatcttggatgaagtggacatt
cacatacaggctaatcttgaagatgacttggtgaaggaggcactgaaaacgggagttgac
ctcaggcaatactctaaacacgtggaggatgaactccaacggattgaacaagcttccatc
aaagactatatcaaggagagccagaacattgcctctctgcacaaccagatcacagcctgt
gactccatactggagcgaatggagggcatgctgagcggcttccagagtgacctctcctcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacatgcggctgaag
aacaggcaggccgtacgcagccacctcagccaactggtggatgagctggtggtgcccggc
gctatgatccagataatcctggagagcccggttacagagcaggagttccttgagcagctc
catgagctcaacaacaagatcaattttgccaaagagctcagcttcagggagactttggcc
tgctctgacatccaggacattgtggaccgtctcaaaatcaaggctgtcacaaagatcaga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatcccc
cagaacactctcctcaagtacaggtttttctatcagttcctcttggcaaacgaaaggaca
gtggccaaggagatcagggatgagtatgtggacactatgagtaagatctactacagttac
ttcaagtcctacagcggcaggctcctcaaagtacagtatgaagaggtggcagacaaagat
gacctgatgggagtggaagacacggccaagaaaggtttcttctccaagccctccctgaag
agcaggaacaccatcttcaccctgggccagcgggggaccgtgctgagccctgccgagctg
gaggggcccatcctcatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgcccttttggacaacggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggctggaaattctgcgctggacctcttcaacagcgtcatg
ggaaagacgctcagcttgttcctgaagagcatgtccacctatgtatcagactgttacgac
agcatcgctgtgttcctgtgtatccacatcatcttgcgttttagagccatcacaaacaag
aggaccatcccagccctggacaagtactgggaggcagtgctggaactgctgtggcccagg
tttgagctcatcctggagatgaacattcagagcatccgcaacacggacccccagaaactg
ggcgtgctggacaccagaccacactatgtcacacgcagatacgcagagttctcttctgcc
atagttagcattaaccagacattcaccagcgagcgaacacacaccctccttggccaactg
caggttgaagtggagaactttgtcctgaagatggctgcagagttcccttcacgcagggac
cagctcattttcctcatcaacaactatgacatgatgctcaatgtactcatggagagggca
gccgatgacagtaaagaggttgagggcttccaacagctcctccaggccaggagccaggag
tttattgaggagattctgtcctctccctttggtggcatgatagcatttgtgaaggagagc
gaggcgctgacggagaaagggcagctggatagactaaagaatgatgaagcccggatcacc
cagctggtcaggggtttctccagtacatggaaacagtctgtggaggctctgagtcaggac
gtcatgaggtccttcaccaacttcaagaatggcactggtatcattcagggggcgctcact
cagctgatccagtactaccatggcttccacaaggtgctgtcccagcccacctttcgcagc
ctggccgtgcgctcggagctcatcaacctacaccacctcatggtcgaagtcaagaaacac
aagcccaacttctaa
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