Coregonus clupeaformis (lake whitefish): 121586516
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Entry
121586516 CDS
T08357
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase isoform X1
KO
K15732
RNA polymerase II subunit A C-terminal domain phosphatase [EC:
3.1.3.16
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121586516
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121586516
Enzymes [BR:
cclu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
121586516
Protein phosphatases and associated proteins [BR:
cclu01009
]
HAD phosphatases
Fcp/Scp phosphatases
121586516
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
121586516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FCP1_C
BSH_Fcp1
NIF
BRCT
Biotin_lipoyl
PTCB-BRCT
Nairovirus_Gn
Motif
Other DBs
NCBI-GeneID:
121586516
NCBI-ProteinID:
XP_041759187
LinkDB
All DBs
Position
17:complement(5492609..5604369)
Genome browser
AA seq
1045 aa
AA seq
DB search
MEEPADSGGGGAAQGPTAQVAEIRCPIAARPMRLLEWKVKPGSLVNVDSVLALCAPIPPE
KEAGSHPPEQPNRLSEKKLKSDRAGVVKELCCQLGQVISPGGVIVRVKECSHPIVMKGLC
AECGQDLTQMQTNNGRQQALISTANVSMVHSVPELMVSSEQAEQLGREDQQRLHRNKKLV
LMVDLDQTLIHTTEHHCQRMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHV
FTFGSRLYAHTIAGFLDPEMKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDR
EDVWKFAPNLITVKKYIYFQGTGDINAPPGSKEAQQGRKAGSQASRPAEASEPAVTSGTT
GPTAGPSGGSSASEEQSNGLKKQRTKDYNNGGREESTAPSVTQGAAANERTQPDGGEAVE
EGRGQGEGAEASTAAQVSDRTNVKDEGKDGSRTLGSGEEAPLPGGLNSSTPRPPSSTPPD
LHEPNSNLDFDLSSDSDSDSLKGKPPSSDNEREGVSSQTKKSKQEGAEQAAVEEPSGGAG
GKKGESKEKSTGENSSAVVGVTSEETSGSGVVFPPDPEQENGRSERREAETESQNSEQSG
VTMGEESLDPSMEEEEEEEEEKEEVDVDKDDHLIYLEEVLERIHGEYYARYDAFLRKERQ
ETPDIRKIVPELKARSLEGTTIVFSGLYPTNYPMERTRENYHAKALGAKLGKGLLLSSKD
PGRTTHLIAARAGTEKVRQAQGCKHLHVVNPDWLWGCLERWERVEESLYPLKEDYTKTQR
SNSPAAFPDLQGTFQNPLFPPAPLHHHRPSPAAPEVRTYDPVTGKLIRRGPQPSRPPSYL
QASMSAAHCDQTSLRGGQKDQQGETAGPSSRDEEQPGPSCRRRERQPSMSETNPLYTFCK
EDLDSMDKEVDDMLDEESDEDGEGRGKKTREMEEEDEMEDEEEGQRPQGSRQSTEGEKQH
HHQQQGLATVVEEAEKTQTPPSDQGDMTLGSVQRGQKRKLAEANEEEEGQSADESTKDSN
EEEEGSSSEADEMAAALDAELNDFM
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcccgcagattccggcggtggcggggcagcacagggccccacggcgcaagtg
gcggagattcgctgcccaatagcagcgcgtcctatgcggctgctggaatggaaagtcaaa
cccgggtccctcgtcaatgtggactcggtgttggcattatgtgctcccatcccgccggag
aaagaggccgggtcccatccaccagaacagcccaatcggctgtcagagaagaagctgaaa
tcggaccgagctggagtggtgaaagagctatgctgtcaacttggacaagtcatatcgcct
ggtggtgtgattgtcagagtaaaagaatgcagccatcccatcgtgatgaaggggctgtgt
gctgaatgtggccaggacctcacacagatgcagaccaataatgggaggcagcaggctctc
atctccacggcaaatgtttccatggtgcacagtgtccccgagttgatggtcagctctgag
caagcagagcagctgggcagagaggaccagcagagactccacaggaacaagaagctggtt
ctgatggttgatctggaccagaccctgatccacaccaccgagcatcactgccagcgcatg
tccaacaagggaatcttccacttccagctggggcggggggagcccatgttacacacgcga
ctgcgtccgcactgcaaagacttcctggagaagatcgccaagctctacgagctgcatgtc
tttaccttcggaagccgcctctacgcacacaccatcgcaggcttcctggaccctgagatg
aagctgttctctcacaggatcctgtccagagacgaatgcatcgaccccttctccaagaca
gggaacctaaggaatctgttcccatgtggggactcgatggtgtgtattatagatgatcgg
gaggatgtgtggaagtttgctcctaacttgatcactgtgaagaaatacatctacttccag
gggacaggagacatcaacgccccacccgggtctaaagaggctcagcagggaaggaaagca
ggcagccaggccagccgaccggcagaggcctcagaaccagcagtaacgtcagggacaacg
gggcctacagcagggccatctggggggtcgtcggcatcagaggagcagagtaacggtctt
aagaaacagcggaccaaagactacaacaatggaggaagggaggagtcaacagccccttca
gtcactcagggagcagcagccaatgaacggactcaaccggacggtggcgaggctgtggag
gaggggcggggtcagggcgagggagccgaggccagcacggcagcacaggtgagcgacagg
acgaatgtgaaagatgaggggaaggatggcagcaggacattgggctcaggggaggaagct
ccccttccgggtgggctgaactcatccactcctcgtcctccatcctccactcctccagac
ctccatgagcccaacagcaacctagactttgacctgtccagcgacagtgactctgactct
cttaagggtaaaccaccctcatcagacaacgagagggagggggtgtccagccagaccaag
aagtccaaacaggaaggggcggagcaggcggcagtagaggagccatcaggcggggctgga
ggaaagaagggggagagtaaggagaagagcactggggagaacagctcagcggtagtaggg
gtgacctcagaggagacgtcagggtcaggggttgtcttccctccagacccggagcaggag
aacgggcgttcagaacggagggaggctgagacagagtcccagaacagtgaacagtcagga
gtcaccatgggggaggagtctctggacccgagcatggaggaagaggaggaggaagaggag
gagaaagaggaggtggatgtggacaaggatgaccacctcatctacctagaagaggtgttg
gagcgtatccatggagaatactacgcccgctacgatgccttcctcaggaaggaacgccaa
gagacgcctgacatcaggaagatcgtcccggagctgaaggccaggagcctggagggcacc
accattgttttctctggactataccccaccaactaccccatggagagaaccagggagaac
taccacgccaaggccctgggagcaaagctaggcaagggcctccttctcagctctaaagac
ccaggcagaaccacgcacctcattgctgctagagcaggtaccgagaaggtgcgtcaggcc
caaggctgtaaacatctacatgtggtgaatcctgactggctgtggggatgtctggagcgc
tgggagagggtggaggaatcactgtatccactgaaggaggactacaccaaaacccaacgg
agcaacagcccagccgcgttccctgacctccaagggaccttccagaaccccctgttcccc
cccgctcccctccaccaccaccgcccctctccagctgcccctgaggtgcggacgtacgac
ccggtcacagggaagctgattcgccgcgggcctcagccctccagaccaccatcttacctc
caggcctccatgtctgctgcccactgcgaccagacctcgctcagggggggtcagaaggac
cagcagggggagacggcgggtccctccagtcgagacgaggagcagcctggaccctcctgc
cgccggagggaacgccagcccagcatgtcagagaccaaccccctctacacattctgtaaa
gaagacctggacagcatggacaaggaggtggacgacatgctagatgaggagagcgatgag
gatggagaaggccgggggaagaagacaagggagatggaggaggaagatgagatggaggac
gaagaagaggggcagcggccacagggtagcagacagagcactgagggagagaagcagcac
caccaccagcagcagggtctggcaaccgtcgtagaggaggcagagaagacacagacgccc
cctagtgaccagggcgatatgacgctgggcagcgtgcaaaggggacagaagcgcaagctt
gctgaagccaatgaggaggaagaggggcagtcggcggacgagtccaccaaggattctaac
gaggaagaggaaggaagcagctcagaggctgatgagatggccgctgccctggatgcggag
cttaacgacttcatgtga
DBGET
integrated database retrieval system
