Coregonus clupeaformis (lake whitefish): 121586517
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Entry
121586517 CDS
T08357
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121586517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121586517
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586517
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121586517
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121586517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
PHTB1_N
UspB
Motif
Other DBs
NCBI-GeneID:
121586517
NCBI-ProteinID:
XP_041759190
LinkDB
All DBs
Position
17:complement(5613340..5634396)
Genome browser
AA seq
1474 aa
AA seq
DB search
MYAVYRQAHSPTAIEFSVYCNFISNEEKNLVVAGTSQLYVYRIIHDVENASKTDKSTGVK
SRKEKLEQVACFSLFGNVMSMASVQLVGANRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HFFEEPELRDGFVQNLHIPMVRVDPENRCAVMLVYGTQLVVLPFRKDTLTDEQEGVVEGP
KSSFLPSYIIDVRELDEKLLNIVDMKFLHGYYEPTLLILYEPNQTWPGRVAVRQDTCSIV
AISLNIMQKVHPVIWSLSNLPFDCTQVMAVPKPIGGVVVFAVNSLLYLNQSVPPYGVSLN
TQTTGTTAFPLRIQEEVKITLDCSQSTFIGSDKMVISLKGGEIYVLTLITDGMRSVRAFH
FDKAAASVLTTCMMTMEPGYLFLGSRLGNSLLLKYTEKYQENPEKPTVEEDKEKEEETDE
EKQEEPPSKKKRGDSSTNLTAGKNQLPDEVDEIEVYGSEAASGTQLATYSFEVCDSILNI
GPCAGASMGEPAFLSEEFQTNPEPDLEIVVCSGFGKNGGLSVLQRSIRPQVVTTFELPGC
HDLWTVISNEVKEKDKEKDKPPAAEGEGETPEEEEEKTEPAPVEDDKKKHGFLILSREDS
TMILQTGQEIMELDTSGFATQGPTVFAGNIGDNKYIIQVSPMGIRLLEGVTQLHFIPVDL
GSPIVQCSVADPYVVIMTADGVVTMFVLKTDSYMGKTHRLALQKPHIASQPCVITLCAFR
DVSGMFTTENKQTCHTEDQDTMFKSQSETETIIQDLSNTVDDEEEMLYGDCNPAGITPTK
DESHPGYRLSSSGALGGGSEGTSGRAEPTHWCMMVRENGVMEIYQLPDWRLVFLVKNFPV
GQRVLVDSSAGQSAAQGEGKKEEVTRQGEIPLVKEVVLVSLGNNHCRPYLLVHVEQELLI
YEAFPYDQQQAQSNLKVRFKKMPHNINFREKKSKVKKDKKAEGQAGLSEEGPTVVKGRVA
RFRYFEDISGYSGVFICGPSPHWMLVTSRGAMRLHPMTIDGPIESFSPFHNINCPKGFLY
FNKQGELRISVLPTYLSYDAPWPVRKIPLRCTVHYVSYHVESKVYAVCTSVKDPCTRIPR
MTGEEKEFETIDRDERYIPPQQENFSIQLISPVSWEAIPNTRIDLEEWEHVTCMKTVALR
SQETVSGLKGYIAAGTCLMQGEEVTCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQK
GPVTALCHCSGYLVSAIGQKIFLWSLKDNDLTGMAFIDTQLYIHQMFSIKNFILAADVMK
SISLLRYQPESKTLSLISRDAKPLEVYSVEFMVDNNQLGFLVSDRDQNLSVYMYLPEAKE
SFGGMRLLRRADFNVGAHVNAFWRMPCRGALDTATKKTLAWDNKHITWFATLDGGIGLLL
PMQEKTYRRLLMLQNALTTMLPHHAGLNPKAFRMLHADRRQLQNAVRNILDGELLNKYLY
LSTMERSELAKKIGTTSDIVLDDLLEVDRVTAHF
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atgtatgccgtgtaccgccaagctcactcccccaccgccatcgagttctctgtctactgt
aacttcatctccaacgaggagaagaacctggtcgtcgctggaacatctcagctttacgtc
tacaggatcattcacgatgtggagaatgcttcaaagacagacaaatcaacaggtgtcaag
agtcgtaaggagaagctggagcaggtggcctgtttctccctgttcggtaacgtcatgtcc
atggcctctgttcagctagtaggagccaacagagacgctctcctgctcagcttcaaagat
gctaagctgtcagtggtggagtatgatccaggaacacatgatctgaagactctctcgctt
cacttctttgaggagccagagctgagggatgggtttgtccagaacctgcacatccccatg
gtccgtgtggacccagagaaccgctgtgctgtgatgctggtgtatggaactcagctggtg
gtgctgccattcagaaaagacacacttactgatgaacaggagggagtagtggaagggcca
aagtccagctttcttcccagctatatcatagatgtccgtgagctggatgagaagcttctg
aacatcgtagatatgaagttcctccacggttactatgagcccacattgctcatcctgtat
gagcccaaccagacgtggcctgggcgtgtagcagtgagacaggacacctgcagtattgta
gccatctcactcaacatcatgcagaaggttcatcctgtcatctggtccctcagcaacctg
ccttttgactgcacacaggtcatggctgtgcccaagcccattggtggtgtggtggtgttt
gctgtcaactccctgttatacctcaaccagagtgttcctccatatggcgtgtcactcaac
acacagaccactgggaccaccgccttccccctgcgtatacaggaggaggtgaagatcaca
ctagattgttcccagtccaccttcatcggctctgataagatggtcatctctctgaaagga
ggagagatctatgtgttgaccctgatcactgatggcatgagaagtgtccgggccttccac
tttgacaaggctgctgccagcgtcctcaccacctgtatgatgaccatggagcctgggtat
ctgttcctggggtcccggctgggaaacagcctcttgctgaaatacacagagaagtaccag
gagaatccagagaaaccaacagtggaggaggacaaagagaaggaagaggagaccgatgag
gagaagcaggaggaacctccgagtaaaaagaagaggggtgattcctctaccaacttgaca
gctggtaagaaccaactgcctgatgaggtagatgaaattgaggtgtacgggagcgaggcg
gcgtctggcactcagttggccacctactcctttgaggtgtgtgacagcatattgaacatc
ggaccttgtgctggtgcgtccatgggggagccagccttcctctctgaagagttccagacc
aacccagagcctgacctggagatagtggtgtgttctggctttgggaagaacgggggtctg
tctgtgcttcagagaagcatccgcccccaggtggtcaccacctttgagctgccaggttgc
catgacttgtggactgtcatctccaatgaggtcaaggagaaagacaaggagaaagacaag
cctcctgcagctgagggagagggtgagacccctgaggaagaggaggagaagacggagcct
gcgccagtggaggacgacaagaaaaaacatggcttcctgattctcagcagagaggactcc
accatgatcctgcagacgggtcaggagatcatggagctggacaccagtggtttcgccacc
cagggacccactgtgttcgctgggaacatcggagacaacaaatacatcatccaggtctcc
cccatgggtatacggctactggaaggagtgacccagctgcacttcatcccggtggacctg
ggttctcccatagtgcagtgctccgtagcggacccctatgtggtgatcatgacggccgac
ggagtggtcaccatgttcgtcctgaagaccgactcctacatgggcaagacccaccgcttg
gccctgcagaaaccccatatagcttctcaaccctgtgtgatcacgctgtgtgcgttccgt
gatgtcagcgggatgttcaccacagagaacaagcagacctgtcacaccgaggatcaagac
accatgttcaagagccaatcagagaccgagaccattatacaggacctcagtaacacagtg
gatgatgaggaggagatgttgtatggagactgtaacccagcaggcatcacccccaccaaa
gacgagtcccaccccgggtaccgcctgtcctcctctggggccctgggtggggggtccgag
gggacgtcgggacgagctgaacccacacactggtgcatgatggtccgcgagaacggcgtc
atggagatctaccagctacctgactggagactggtgttcctggtcaagaacttccctgtt
ggccagagagtgttggttgacagctccgccggccaatcagcagcccagggggaggggaaa
aaggaggaagtgacacgacagggagagatcccattggtcaaagaggtggtcctggtgtcg
ctcggcaacaaccactgcagaccctacctgctggtccatgttgaacaggagcttctgatc
tatgaagcgttcccatacgaccagcagcaggctcagagcaacctgaaggtccgcttcaag
aagatgccccacaacatcaacttccgggagaagaagtcgaaggtgaagaaagataagaag
gctgagggtcaggctggtctcagcgaggaggggccaacagtggtcaaaggtcgcgtggcc
aggttcagatactttgaggatatctctggctactctggggtgttcatctgtggcccctcc
cctcactggatgctggtgacatcacggggggcgatgaggctccaccctatgacgatcgac
ggaccaatcgagtcattctcccccttccacaacatcaactgccccaaaggcttcctctac
ttcaacaagcagggcgagctgaggatcagtgttctacccacgtacctgtcgtatgacgcc
ccctggccagtcaggaagattcctctgagatgcaccgttcactatgtgtcctaccatgta
gagtccaaggtgtatgcagtgtgcaccagcgtgaaggacccctgcactcgcatccccaga
atgaccggagaggagaaggagtttgagaccatagacagagacgagcgctacatcccacct
cagcaggagaatttctccattcagctcatatctcctgtcagctgggaggccatccctaac
acacggattgacctggaggagtgggagcatgtgacctgtatgaagacggtggcgttgagg
agtcaggagaccgtgtctgggctgaagggatacatagctgccggtacttgtctcatgcag
ggggaggaggtcacctgtaggggccggatcctgatcctggatgtgattgaggtggtccca
gaacccggtcagcccctgacgaagaacaaattcaaggttctgtatgagaaggagcagaag
ggaccggtcacagctctgtgtcactgcagcggatacctggtctctgccatcggacagaag
atctttctgtggagtctgaaagacaacgacctgacaggcatggccttcatcgacacccag
ctttacatccaccagatgtttagcatcaagaactttatcctggcagctgacgtcatgaag
agcatctctctgctcagataccagcctgagagtaagacgctgtcgctaattagcagggat
gccaagcctctggaggtttacagcgtagagtttatggtggataacaaccagctgggattc
ctggtgtcagaccgagaccagaatctgtcggtgtacatgtatctgcctgaagctaaggag
agtttcggaggcatgcgtctcctgaggagggcagacttcaacgtgggagctcatgtcaac
gccttctggaggatgccctgtcgaggggcactggacacagccaccaagaagaccctggcc
tgggacaacaaacacatcacatggtttgcaactctggatggaggcatcgggctgctgctg
cccatgcaggagaagacctaccgcagattgctgatgttgcaaaatgctcttaccaccatg
ctgccacaccatgcaggattaaaccccaaggcattcaggatgttgcatgctgaccggcgg
cagctccagaacgcggtgcggaacattctggatggagagctgctcaacaagtacctgtac
ctcagcaccatggagcgcagtgagctggccaagaagatcggcaccacctctgatatagtc
ttggatgatcttcttgaagttgacagggtgactgctcatttctga
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integrated database retrieval system
