Coregonus clupeaformis (lake whitefish): 121586530
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Entry
121586530 CDS
T08357
Name
(RefSeq) AT-rich interactive domain-containing protein 1A-like
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121586530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586530
03021 Transcription machinery [BR:
cclu03021
]
121586530
03036 Chromosome and associated proteins [BR:
cclu03036
]
121586530
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
ARID
121586530
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
121586530
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
121586530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Nop14
Motif
Other DBs
NCBI-GeneID:
121586530
NCBI-ProteinID:
XP_045081994
LinkDB
All DBs
Position
17:7020225..7071766
Genome browser
AA seq
2326 aa
AA seq
DB search
MAAQVASVATLNTSPPSELKKPDRDPLEESVPGEKQHENKEPGSDNGSPGQKDLQDGADA
GNVGGGGEPDMKNGNGNSSRVNNNNNQNDTGGPEGNNHPGMGHHHQGSFPPPPYGYNQHY
SRGPFHQHGGQQSPGMAAAAGPAVQPGNMMDPYPPNSHDHGFPNHLNNYSPFPNRTSYQG
QGYAMNSPRNNQPPAAGGQPVKQQPAGGTTAMAASYNNQRYNMGNTQPTSTPTLNQLLTS
PSPTRSYQNYPQGDYSNQEGASKGAADMASSQYGGGHPGWQQRSHHPPPMSPGNTGQPLN
RNQPPSPMDHVGKMRGQGYGGANPYSQQQQGQGQGPPPPGAQQGASYPGQGYGPPGPQRY
PMGMQGRTSAGMGGMQYGQQMAGYGQQGPGGYGQQSQGYYGQQQAPYPQQPQTTPGTQAP
YPQQVHPSQGQPSAQHGQPGAPGPYPQGQGPPQGGPPQAQPPYNQGPPQQQSGPQQGQPG
PQGQGPQPSYPQQQGPPGPGQGQQPPQQQPPSQQQGPPQQQQDRAAAPQAQPPPGHQQPP
GHQPSPGHQPPPSHGGQQPPPGHQPSPGPQGHHPSPGHGGPPQQQGQSQQGQPSPYSQTP
PLQQSPFQRFPPPPQELSQDSFSSQSSAPPSNQPMTSNKSGAEDSMQGRPSSLPDLSGSI
DDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASV
TPSRSGPLSPAAVPGNQMPPRPPSVHSDGILHSSMNQSAMGQDRVYMRNPQMPPYGSPQQ
PGSALSPRQSSGGQMHPGMGPYPQNNSMGNYGPQGGQYGPQGYPRQPGYSGMPNANYPGG
PGGINPGMNPMPGQAGGAPYAGMPPGRMGPGQMGARPYCPGMGPNMGPGMPPQVTSGMCP
PPGMNRKGPGGPPDAASAMHHGANSIHNRPPGYPPNMPQGMMGAGSPYGPGPGAINSMQG
MMNQGGPYGGGPMGGNMANNTPGMAPSPEFGIDVKLNPAQKINNKVDGTPKPETKKVKKK
SNSSTTTNEKITRLYELGPELERRTWVDRYLAFAEEKAMGMTNLPAVGRKPLDLFRLYVS
VKEIGGLTQVNKNKKWRELSTNLNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDL
FTDAKKTTQPKIQPPSPAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQMPPMPV
RLQDPFADGGDPAFARRNSITPNSYQPGMGGPEMMGRMGPYEPNKDPFGGMRKAGEQFMT
PGPGPNSGMEGQFNRGPPGPMGPNMQMGPRQQYPYGPGYDRRQEPGMGPDGSMGPGAPQP
NLMPSGADSGMYSPSRPPPQQRHDSYGNQYPGQGAPPGGPYPNQQPGMFPQQQPNYKRPP
VDGGYGPPAKRHEGDGMYNVPFSGQQQPGPQPSGGPQGQQDMYNQYNAGYPGSDRRPPGP
QGQFPFPFGRDRGSSSGGPNSQSPMPPQMMGSPMQAAPDGPQGPMWQGRNEMGYPNYPNR
QGPPGPGQGPPQGYHGMNRSEEMMPGADQRMNHEGQWPGHPSQRQSPYGPGGSGPPMSRP
LQSNYQSSQNHISQVSSPAPMPRPMESRTSPSKSPYMHSGIKMQKAGPPVPASHIGQAPM
QPPLIRRDIAFPPGSVEASQPILKPRGRLTMKDIGTPEAWRVMMSLKSGLLAESTWALDT
INILLYDDNSISTFNLCQLPGFLELVVEYFRRCLIEIFGILKEYEVGDPGQRTLIDPHAA
DEDWSDEELPEQEDMEEDEEEEEEDEEEEDTTTSSQQVQVKQEEEEESTTENSTAEEEEK
ERKGGESSSTSSAPQNLSLLQEKPKQASKFDKLPIKMVRKKDPFPGGRSSKLGRRQSFDS
GLIHWSIGGGDTTEHIQTHFESQCDILKQRKRVPPSATESRKKVAVPATVSEDPEKTTKP
GKEEQTTSPAEKTTKASAPTTPAPVTATIDDVLSARPGSVTEEAVRGAAEEQKENGGKFL
FSIRQAQQSRRNITILEDEPHSKDETPLNTLSDWQDTLARRCVCVSNIVRSLSFIPGNDL
EMSKHPGLLLLLGRLVLLHHRHPERKQAPVTYEKEEEEDERVSCERDEWWWDCLEVLREN
CLVTLANISGQLDLSIYPESICLPLLDGLLHWAVCPSAEALDPFPMLGPHGALSPQRLVL
ETLSKLSIQDNNVDLILATPPFSRLEKLYGTLVRLVGERKVAVCREMSVVLLANLAQGDG
MAARTIAVQKASVGNLLGFLEDSLTATQYQQSQSSMMHLQGAHFEPTSVDMMRRAARALH
AMAKVEENHSEFTLYESRLLDISVSPLMNSLVSHVICDVLFLIGQS
NT seq
6981 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgctagcgtcgccactctcaacactagcccgccatccgaacttaaa
aagccggatcgggacccactggaggagtcggtaccgggagagaaacaacatgaaaataag
gaacctggatctgacaacggatctccgggccagaaggatctgcaggacggggccgatgct
ggaaatgtagggggaggaggggagcctgacatgaagaacgggaacgggaattcgtccagg
gtgaataataataacaaccagaatgatacggggggaccggaggggaataaccaccccggg
atgggccatcaccaccagggctcattccctccacctccttacggttacaaccagcactac
agccggggcccttttcatcaacatggcggacaacaaagccctggcatggcagctgcagcg
gggccggcagtgcagccaggcaacatgatggacccatacccgcccaactcacacgaccac
ggcttccccaaccatttgaacaactacagccccttcccaaaccggacttcttatcagggc
caaggatacgccatgaattccccgcgtaataaccagcccccggcggctggggggcagcca
gtgaagcaacagccagcaggcggaactacagctatggctgcctcgtacaataatcagagg
tataacatgggaaacacacagcccacgtctaccccgactttaaatcagctcctaacgtct
cctagccctacaaggagctaccagaattacccacaaggagactatagtaaccaggaaggg
gctagcaagggagcagcagatatggccagcagtcagtatggtgggggccatcctggttgg
caacaaaggagccaccatccgcctcctatgagcccagggaacacgggacaacctctgaac
agaaaccagccccccagccctatggaccatgtagggaagatgcgaggccaggggtatggt
ggagccaacccctactcccagcagcagcaaggccaggggcagggccctcctcctccaggg
gcccaacagggtgcctcctacccaggccagggctatggaccaccggggcctcagaggtac
cctatgggcatgcagggacgcacctccgccggcatgggtggcatgcaatacggacaacag
atggccggctatgggcagcagggtccagggggctacggtcagcagagccagggctactac
ggccagcagcaggccccctatcctcagcagccccagactacccctggaacccaggccccc
tacccccagcaggtccacccctcccagggccagccctcagcccaacacggccagcctggg
gcccccggcccctacccccagggccaagggcctccgcaggggggtccaccccaggcccag
ccaccctacaaccagggaccgccccagcagcagtcggggccccagcagggccagcccggg
ccccagggtcagggcccccagcccagctaccctcagcagcaaggacccccaggcccaggg
caggggcagcagcctccacagcagcagcccccctcgcagcagcaaggacccccccagcag
cagcaagatagggcagccgctccacaggcccagccacccccgggccatcaacaaccccca
ggccaccagccctctccaggccaccaaccaccccccagccatggtgggcagcagccaccc
ccaggccaccagccctccccgggccctcagggccaccatccctctccaggccacggtgga
cccccacagcagcagggtcagtctcagcagggccagccctcaccctactcccagacccca
ccgctgcagcagtcgcccttccagcggtttccacctccgccacaggagctctcccaggac
tcattcagctcccagtccagtgctcccccctccaaccagcccatgacttccaacaagagt
ggagcagaggacagcatgcagggacggccttctagcttaccggacctctctggttccata
gatgacctgccgacgggtacggagggggctctgagtccaggggtcagcacgtcgggggtg
tccagtagccagggggaacagagtaaccccgcccagtcacccttctcccctcacacctcg
ccccacttgcctggcatccgcgggccctccccctcccctgtgggctcccctgccagcgtc
accccctcccgctccggacccctctcacctgctgccgtgccaggtaaccagatgcctccc
cggccgcccagcgtccattcagacggcatcctccactcatccatgaaccagtcagccatg
ggccaggacagggtgtacatgcgtaacccccagatgcctccatacgggtcgccgcagcaa
cctggctccgccttatcccctcgccagtcgtcgggaggccagatgcatcctgggatgggg
ccctaccctcagaacaactccatggggaactacggccctcagggcggacagtacggacca
caaggttaccccagacagcccggctacagtggcatgcccaacgccaactaccctggtggt
ccggggggcataaatcctggtatgaaccctatgccaggccaggctggtggggcgccgtat
gcaggcatgccccctggcaggatgggtccgggtcagatgggtgctcgcccctactgcccc
gggatgggccccaacatgggccccggcatgcccccacaggtgacctctgggatgtgcccc
cctccaggcatgaacaggaagggccctgggggccctccggatgcagcctctgccatgcac
cacggagccaactctatacacaaccggcctccaggttacccccccaatatgccccagggg
atgatgggagcagggtctccgtatggcccagggccgggggccatcaacagcatgcaaggt
atgatgaaccagggaggaccctacggaggagggccaatgggagggaacatggccaacaac
acacctggcatggctcctagccctgagtttggcatcgatgtcaaactgaacccagcccag
aagattaacaacaaggtggacggcacgcccaaacctgaaaccaagaaggtaaagaagaag
tcaaattcttcgacgacgaccaatgagaagataacgcgtctgtatgagctgggtccggag
ctggagaggaggacgtgggtagaccggtatctggcgttcgctgaggagaaggccatgggc
atgaccaaccttcccgctgtgggacgcaaacctctggacctcttcagactttacgtctcg
gtgaaagagatcggaggcctcacacaggtgaacaagaataagaagtggagggagttgtcc
accaacctgaacgtgggcacgtccagcagcgctgccagctctctgaagaaacagtacatc
cagtgtctgtacgccttcgagtgcaagatcgaacgtggcgaggacccgcccccggatctc
ttcaccgacgccaaaaagaccacccagcccaagatccagccccccagcccagctggatct
ggatctctgcagggcccccagaccccccagtctaccagtagttccatggcggagggggga
gacctgaagccccccaccccagcctccacccctcacagccagatgccccccatgccagtc
aggctgcaggacccatttgcagacgggggcgacccggcatttgccagacggaactctatc
acccccaacagctaccagcctgggatgggtggtccggagatgatgggtcgcatggggccc
tacgaacccaacaaggacccctttggtggcatgaggaaagctggagagcaattcatgact
ccagggccggggcctaacagtggtatggaggggcagttcaacagaggccccccagggccc
atgggccccaacatgcagatgggtccgagacaacagtacccctacggacctggatatgac
aggagacaggagccagggatgggtcctgacggcagtatgggtcctggggccccccagccc
aacctgatgccttcaggggccgactcggggatgtactcccctagccgacccccaccgcag
caacgtcatgattcctatggtaatcagtaccctggccaaggagcgccacctggtggcccc
taccccaatcagcagccaggaatgtttccacagcaacaacccaactacaagcgtcctcca
gtggacgggggctacggtcccccagcgaagcgtcatgagggggatgggatgtacaatgtc
cccttcagcggtcagcagcagccggggccccagccctccgggggcccccagggccaacag
gacatgtacaatcagtacaacgcaggctaccccggctctgaccgccgaccacctggcccc
cagggccagttccctttcccctttggccgagaccgggggtcctccagcggggggcccaac
tcccagtcccccatgcctccccagatgatgggcagccctatgcaggcagcccctgatggc
ccccagggccccatgtggcagggacgcaatgagatgggttaccccaactaccccaaccgc
caggggcctccaggacctggccaggggcccccccagggctaccacggcatgaaccgctct
gaggagatgatgccaggggccgaccagcggatgaaccacgagggccagtggccgggacac
cccagccagagacagtccccctacgggccggggggctcgggcccccccatgtccagaccc
ctgcagtccaactatcagagctcccaaaaccacatttcccaggtgtccagccccgctccc
atgccccgccccatggaaagccggacgtccccctcaaagtcgccctacatgcactcaggc
atcaagatgcagaaggcggggccccccgtgcccgcgtcccacataggccaggcccccatg
cagccccccctcatcaggcgggacatagccttccccccagggtcggtggaggcctcccaa
cccatcctcaaaccccgaggacgactcaccatgaaagacatcggcaccccagaggcctgg
agagtgatgatgtcactgaagtcaggcttactagctgagagcacttgggccttggacacc
attaatattttactatacgatgacaacagcatttctactttcaacctctgccagctgcca
gggttcttggagctggtagtggagtatttcagacgctgcctcatcgagatcttcggcatc
ctgaaggagtatgaggtgggagaccctggccagcggacgctcatcgacccgcatgctgcc
gacgaagactggtccgatgaagagctgcccgagcaggaggacatggaggaggacgaggaa
gaagaggaggaggacgaagaggaggaggacaccaccacctcgtcgcagcaggtccaggtg
aaacaggaggaggaggaggaatccacgacggagaactcgacagcagaggaggaggagaag
gagaggaaaggaggagagtcttcttccacctcctcagccccccagaacctcagcctcctc
caggagaaacccaaacaggccagtaagttcgacaagctacccatcaagatggtgcgtaag
aaagaccccttccccgggggccgttccagtaagctaggccggcggcagagcttcgacagc
gggctgatccactggagcatcggcgggggggacaccacggaacacatccagactcacttc
gagagtcagtgcgacatcctcaagcagcggaaacgggtgccgccatcagccaccgagagt
agaaagaaggtggccgtgcccgcgacggtgtcagaagacccagagaagaccactaagcct
ggcaaggaagagcagaccacctcccctgcagagaagaccaccaaggcctctgccccaacc
acgcccgccccggtcactgctaccatcgacgacgtcctgtcggcccggccgggctcggtg
acggaggaggcggtgcgaggagcagccgaggagcagaaggagaacggggggaagttcctg
ttctccatccgccaggcgcagcagagccgacgcaacatcaccatcctggaggacgagcct
cacagcaaggatgagaccccactgaacacgctgtcggactggcaggacaccctggctcgc
cgctgcgtctgcgtctccaacatcgtccgctcgctgtccttcatccccggcaatgacctg
gagatgtccaaacacccggggctgctgctgctgctgggccgtctggtcctgctccatcac
cgccacccagagaggaaacaggcccctgtcacctacgagaaggaggaggaggaggacgag
agggtgagctgtgagagggacgagtggtggtgggactgtctggaggtcctcagggagaac
tgcctggtcactctggctaacatctccggccagttggacctgtccatctacccagagagc
atctgtctgcccctgctggacggcctgctccattgggctgtttgtccctcggccgaggcc
ctggaccccttccccatgctggggccccatggggccctatccccccaaagactggtgctg
gagaccctcagcaagctgagcatccaggacaacaacgtggaccttatcctggccacgccg
ccgttcagccggctggagaagctgtacgggacgctggtacgtctggtcggggagaggaag
gtggccgtctgtagggagatgtctgtggtcttactggccaacctggcccagggagacggc
atggcggccaggaccatcgctgtgcagaaggccagcgtaggtaacctcctgggcttcctg
gaggacagtctaacggccacgcagtaccagcagagccagagttccatgatgcacctacag
ggggcgcactttgagcccactagcgtggacatgatgcggcgagcggcccgcgccctgcac
gccatggctaaggtggaggagaaccactcagagttcaccctgtacgagtcccgcctactg
gacatctctgtctcaccactcatgaactctctggtatcccatgtgatctgtgacgtactc
tttctgattggccagtcatga
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integrated database retrieval system
