Coregonus clupeaformis (lake whitefish): 121586534
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Entry
121586534 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13-like
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586534
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
121586534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
121586534
NCBI-ProteinID:
XP_045065584
LinkDB
All DBs
Position
30:complement(49730702..49743684)
Genome browser
AA seq
2088 aa
AA seq
DB search
MSKIRRRVTVENSKTISDSSSSQTTTTPSRRPSVFERLGPSTGSNAVETNCRNWLKTGNC
SYGNTCRYTHGTQPRGKGFSGSFSRSAERPTGDLRERMKNKRQDVESDATKRDPEEPTSP
TARQRDSSRGHREKEDIKITKERTPTSEEETTEWEANREDSDNGDYDYELSLEMKRQKIQ
RELMKLEQENMEKREEIVIKKEVPEPTTKTRTTIISKTSPERSSSKGSPSSRKSSGSPKH
AKGPKSSGSRKKEKKTSVSSSVSDPATARSSKGSHGKKKGPRTPSPPPPVPPLVNPVVAA
GGKKHKGKHKSKEKCEEKPPKEGKERGRDVEKHKEKKEKRRDRSDSSHKAKRSVMSEERS
GSVSSPSRDREVSPSARKIKSASPKAASQKTLAPGSPPHRSPPPRHKRTPTPPRHHSPSS
HSGSSAQRHSPSPRRRRSASPAYNREPPAAASPPGQRCASRSPAASRDTSSPQRRTSPGG
RNHSRGRERGRSERGRSPPAQERRHERRDESRGKREKDCSRDDRDYEAAETSSSRDGARE
DRETKEGRERRSDGRSDRRGDSTGTSRDATRDRDRDTRDTKDSTREPRTTETTSARSGRD
SLEYRDRERERGEREKTDRDRKEEAVPEEGRSYGRGHGREEGGRTDGRGETRTESRAERP
GRGRGREADGSDKGSTRNSRGSQLESGGQDSWESRSGGGFREKSAERSTDRGAERGGGAE
RGGAERDRYDGDRRGGEQATGRDSSYDRRGGHTDRGDRRENRERDQRASSPGRHPARGEE
PEREETRGRDERRGEEKGGGDRREDRGREREREREREREREREREKEKEREREKEKEAER
ERVREREREREREREKEREREKEKEREKEREREREREEREREREERERERKERERERERE
REREREQRERERQREWEEREKGREERRERTRDEPRDDRSVRDSHEDRKTSRKRHRVETTP
SPTRPSPKRARDVTPGDSDGYNSAEEKSVEKHRLLSQVVLPPQDSLLRSPPSAPVAEDPK
PSRWKDEERRGGGDKREGRSRRKEEADARGDRGGAGRGEERRGEQPSDSSTPVSASGSDS
RRGKERDARDPTPPPPPVALVTEDRDRDAPVPSGHEGKKKTKSQKKGLKKGRKEEEVAGG
VSGAPERFTNPEPPSDGPPPPLLSPRKAPKKKALDKKRKRSRGAESDASEEEPGSSHLPP
GKRNKRGPRTPPPAPKEALLSQRAVPHPGTEPLPQPVKMDANFSDWSDEDVLERGSESAA
AKAPPTIPTERTPTEALPRRGGPRGGKERERPVPPPIAPLLSQDPPMLLQTLPPQPLMSQ
PLLRKPPPEQKRSSSMGSNQSRASSRRLRSPSNESAHREDHQQGQGPGRPRRGRQLQGGN
SRDRERERERDRERERERGERERGPVATEPPAARGEERKSRIDQLRRGEPSRSTSSDRQD
SRSHSSRRSSPESERQVQSRAGSYDGREREREREREREQFERERERKDLRQQQQQGPPGP
LPPLQQQGQQRDWEPEGPREWGGRGREPLMRGGNREPMRERDLRDMRGERERLLPEGLLQ
QHERERDRERGGNRGGGRGGDHGNDRERERMLLMDLPPHGDPKNRMDMRGDNMRPDMRGD
NMRPDMRGDRPDLRGDMRGDMRPDMRGDIRGDMRTDMRGDIRGDMRPDMRGDIRGDMRPD
MRGDIRVDMRPDMRGDIRGDMRPDMRGDIRGDMRTDMRGDIRGDMRPDMRGDIRGDMRPD
MRGDIRGDMRTDMRGDIRGDMRPDMRGDIRGDMRGGPDIRPDMRPDHMRPDMIRGPDRAE
FSLLLPHEALGHGGMDQDKPGNSHHPVGGEIQEAEKQDSIDDDDDAKADDAVSVVSGGEE
YEPISDDELDEILADSAQKREDGQDDEKPPGPLDVIDVDWSSLMPKQKQEPRAAGAALLR
FTPGAVLLRAGVSKRLAGPELLERVREVCKKELDDPKDADKLFEHDLGALNKAAVNRKVE
RAGLLRNLGPCCKALCARRDMAIRRQLLKNEKGLTKQMYPSVPVVDSELFQLSMRLFKKT
VAAASSNQPLLGPPAGPEKANKGPPGLVPAASPVAKPGTPQPSEVCLS
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagataaggcggagggtaacagtggagaattctaaaaccatatctgacagtagc
agtagccagaccaccaccactccgtctcgccggcccagcgtgtttgaaagactcggcccc
agcactggtagtaatgctgtcgagactaattgtagaaattggttgaagactgggaattgc
agttacggcaacacttgtcgctacacacatggaactcagccacgaggcaaaggatttagt
ggatcttttagcaggtcagcggagagaccaactggcgatctgcgagagaggatgaagaat
aagaggcaggatgttgaatcagatgctacaaagagagacccagaagagcctacgtccccc
acagccagacagcgagactcgtcccgaggccacagggagaaggaagatataaagatcact
aaagagagaacccctaccagcgaagaagagaccactgagtgggaagccaaccgcgaagac
tccgataacggcgactacgactacgaattatccctagagatgaagagacagaagatccag
cgggagctcatgaaattggagcaagagaatatggagaaaagagaggagattgttatcaag
aaggaggtaccggaaccaaccaccaaaactaggaccacaatcatatccaagacatccccg
gagcgttccagctctaaaggttccccctcctccaggaagtccagtggatctcccaaacac
gctaaaggacccaaatcttccggttctaggaagaaggagaagaagacctctgtgtcgtcc
tctgtgtccgacccggccacggccagatcttccaaggggagccacgggaagaagaaaggt
ccccgcacccccagcccccctcctccggtgcctcctctggtgaaccctgtggtggcagcc
ggggggaagaagcacaagggaaagcacaagagcaaggagaagtgtgaggagaagccgccc
aaggagggaaaggagagggggagagatgtggagaaacacaaggagaagaaggagaaacgc
agagaccgatcagacagctcccacaaggccaagcggtcagtgatgtctgaggaacgttcc
ggcagcgtgtcctctccttccagagaccgagaggtgtccccatcagccaggaagatcaag
tccgcctccccaaaagcagcctcccagaagacccttgcgcctggctccccacctcacagg
tctccccctccccgccacaagcgcacccccaccccgccccgccaccactccccctcctcc
cactctggctcttcagcccagagacactctccttccccccgccggcgccgctcggcatcc
cccgcctacaaccgcgagcccccagccgccgcctcacctcctggccagaggtgtgcctcc
cgctcccctgcagcctcccgggacacctcctctcctcagaggaggactagccctggagga
cgaaaccactctcgggggcgtgagagaggacgcagcgagagggggaggagcccacctgcc
caggagcgccgacacgagcgcagagacgagagccgcgggaagcgagagaaagactgtagc
cgtgacgaccgggactacgaggcggcagagaccagctcttctcgtgatggcgcccgtgag
gaccgggagacgaaagaggggcgagagcgccggagtgacgggcgcagcgaccgacgagga
gactccaccggtacctccagggacgccaccagggatagagaccgagacaccagggacacc
aaggactctacccgggaacccagaaccacagagaccacgtcagcacgctccggacgagac
tctctggaatacagggaccgggagagggagagaggagagagggagaagacagacagggac
aggaaggaggaggctgtcccggaggaggggaggagctatgggaggggccacgggcgagag
gaaggggggaggactgacgggaggggggagacgaggacagagagtagagctgagagacct
ggcagggggaggggccgcgaggctgatggatctgacaaaggctccacccggaactctcga
ggctcccagttggagagtggtggccaggacagttgggagtcacgaagcggcggaggcttc
cgtgagaagagtgcagagaggagcaccgaccgtggcgcggagagaggaggaggcgcggag
agaggaggagcggagcgtgaccgttatgacggagacaggagaggaggggagcaggccact
gggagagactcatcctacgaccgtagaggtggtcacaccgaccgtggtgaccgcagagag
aaccgggagagagaccaaagagcgtcctctcctggtcggcacccagccagaggagaagag
ccagagagggaggagaccagagggagggatgaacgcagaggagaggaaaaaggagggggg
gacagacgagaggacaggggccgagagagggagcgagaaagggaacgggaaagagagagg
gagagagaaagagagaaggaaaaggagagagagagggaaaaggagaaggaggcagagcgg
gagagggtccgggagagggagcgagaacgggagagagaacgggaaaaggagagagagagg
gaaaaggagaaagagagggaaaaggagagagagagggaacgggagagggaggagagggag
cgggaaagggaggagcgagagagggagaggaaggagagagagcgggagagggaacgagag
cgggagagggagcgtgagcagagagagagggagagacagcgggaatgggaggagcgagag
aaaggaagggaggagcgacgtgaacggactagggatgaaccaagggacgaccgctctgtc
cgagactcgcacgaagaccgcaagaccagccggaagaggcacagggtagagaccacaccc
agcccgactcgcccctcccccaagcgagcaagggacgtcaccccaggagacagcgacgga
tacaacagcgctgaggagaaaagtgttgagaaacaccggctgttgagtcaggtggtactc
ccgccccaggactccctcctgcgttccccccccagcgcccctgtagcggaggaccccaag
cccagccgctggaaggacgaggagcgccgtggaggcggggacaagagggaggggaggagc
cggcggaaggaggaggctgacgcccgcggagacagaggaggagcagggagaggagaggag
agacgtggggagcagccctcagatagcagtacccctgtctcggcctccggctcggactct
aggagaggtaaagagagggacgctcgggaccccacccctcccccgccgcccgtggccctg
gtcactgaggacagagaccgagatgctccagtcccatcaggtcatgagggcaagaagaag
accaagtcccagaagaaaggcctgaagaaggggaggaaggaggaggaggtggcaggaggt
gtttcaggagctccagagaggttcaccaacccagagcccccctcggacggccccccgccc
cctctcctctccccccgcaaggcgcctaagaagaaggcactggacaagaagaggaaacgc
tcccgtggcgcagagtcggatgcgtcggaggaggaaccaggctcctcccatcttcccccc
ggcaagaggaacaagaggggtccccgaacgcccccgcccgcgcccaaggaggctctgcta
tcccagagggccgtgccacatcctggcacagagcccttgccacagcccgtgaaaatggac
gccaacttcagcgactggtctgacgaggatgtgctggagcgcggcagtgaatcagcggcc
gcgaaggcaccccccacaatccccactgagaggactccgaccgaagctcttcccaggaga
ggaggtccgagggggggcaaggagagggagaggcctgttcccccgcccatcgcccctctg
ctgtcccaggaccctcccatgctactccagaccctgcccccccagcccctcatgtcccag
cccctgctgaggaagcctcctccggagcagaagaggagcagcagtatgggaagcaaccag
agcagggcctcatccagacgtctccgctctccctccaacgagtcagcccacagagaggac
catcagcagggccaaggaccaggccgacccaggagaggacgccagctccaggggggcaac
tcccgagaccgggaacgagaaagggagagagacagggaaagagagagggagcgtggtgag
agagagaggggaccagtggccacagagccaccggcggcgaggggagaggagcggaagtcc
cgcatcgaccagctgaggagaggagagcccagtcgcagcacctcctcagaccggcaggac
tctcgcagccacagctccagacgcagctccccagagtccgagcggcaggtgcagtcccgg
gccgggtcctacgacggccgagagcgcgagagggagagggagagggagcgggaacagttt
gagagggagcgtgagcgcaaggacctccgacagcaacaacaacaggggcctccggggcca
ctacctcctctccagcagcaggggcagcagagagactgggagcctgaggggccacgggag
tggggtgggaggggccgtgaacccctcatgcgtggaggcaacagagagccaatgagagag
cgtgatctccgtgacatgcggggtgagcgagagcggcttctgcccgagggtctcctgcag
cagcacgaacgagagcgggacagggagcgcggcggcaacaggggcggtggccgcggtggc
gaccatggcaacgaccgggagcgggagaggatgctgctgatggacctgccgccacatggg
gaccccaagaacaggatggacatgaggggagacaatatgagaccagacatgaggggagac
aatatgagaccagacatgaggggagacagaccagatttaagaggagacatgcgaggggat
atgagacctgatatgaggggagacattcgaggagatatgagaaccgatatgaggggagac
attcgaggggatatgagacctgatatgaggggagacattcgaggggatatgagacctgat
atgaggggagacattcgagtggatatgagacctgatatgaggggagacattcgaggagat
atgagacctgatatgaggggagacattcgaggggatatgagaaccgatatgaggggagac
attcgaggggatatgagacctgatatgaggggagacattcgaggagatatgagacctgat
atgaggggagacattcgaggagatatgagaaccgatatgaggggagacattcgaggggat
atgagacctgatatgaggggagacattcgaggggatatgagagggggaccagatataaga
ccggacatgaggccagatcacatgagaccagatatgatcagggggccggacagggctgag
ttctctctcctgctcccccacgaagccttgggacacggcggcatggaccaggacaaacca
ggcaacagccatcaccctgtgggaggagagatacaggaagcagagaaacaggacagcatt
gacgacgacgatgacgcgaaggcggacgacgctgtgtcggtggtgtctggcggggaggag
tacgagccaatcagtgatgacgagctggatgagatcttggcggacagtgcccagaagaga
gaggatgggcaggatgatgagaagccaccaggtcccctggacgtgattgatgtggactgg
tccagcctgatgcccaagcagaagcaggagccccgggcagcaggggcagctctgctccgg
ttcaccccaggggcggtgctcctcagggcgggcgtctccaagcggctggctgggcccgag
ctcctggagagggtcagggaggtctgcaagaaggagctggatgatcctaaagatgctgac
aagctgtttgagcatgacctgggtgctctgaacaaggcagctgtgaacaggaaggtagag
agggcaggtctgctgaggaacctgggcccctgctgtaaggccctctgcgcccgcagggac
atggccatcagacggcagcttctcaagaatgaaaagggcctgaccaagcagatgtacccc
agtgttcctgtggtggacagtgagctcttccaactcagcatgcgtctcttcaagaagact
gtagccgccgccagcagcaaccagcccctgttggggcccccagcaggcccagagaaggcc
aacaaggggccaccggggctggtaccggcagcttcaccagtagccaagcccggtacacca
cagccctccgaggtgtgtctctcctga
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integrated database retrieval system
