Coregonus clupeaformis (lake whitefish): 121586557
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Entry
121586557 CDS
T08357
Name
(RefSeq) thyroid hormone receptor beta isoform X1
KO
K08362
thyroid hormone receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04081
Hormone signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121586557
04081 Hormone signaling
121586557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586557
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121586557
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121586557
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
121586557
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
CpXC
Motif
Other DBs
NCBI-GeneID:
121586557
NCBI-ProteinID:
XP_041759259
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Position
17:complement(9098708..9250112)
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AA seq
509 aa
AA seq
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MNYCMPDMYEMPHGVGGGYPMQGGGEYCMYGGDGPGGYCEPQPMHPIHPPCMEQAWPPNQ
PYACSYPGPNPVFKSEYCNMEVPLGHYHHQPDYYSEGKPDFSHMQWMQEVNKKGYIPSYL
DKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEAKCIIDKVTRNQC
QECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRKDELQKTVWDRPEPSQEEWDL
IRMVTEAHMSTNAQGNHWKQKRKFLVEEAMLLNEITCNLFYTSDQSAVGVKETKPEDIGQ
ASVINAPEGSKVDIEAFSQFTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEI
MSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGVSLSSFHLDDSEVAL
LQAVILLSSDRPGLTSVERIERCQEEFLLAFEHYINYRKHKVAQFWPKLLMKVTDLRMIG
ACHASRFLHMKVECPNELFPPLFLEVFED
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaactactgcatgcctgacatgtatgagatgcctcatggcgtgggcggtggctacccg
atgcagggcggtggggaatactgcatgtatggaggtgatggtcccgggggatactgtgag
ccccagcccatgcaccccatccaccctccctgcatggagcaggcttggccccccaaccag
ccgtacgcctgctcctacccaggacccaaccctgtgttcaaaagtgaatactgcaacatg
gaagtgcctctcggccattaccaccaccagcctgactactattctgaggggaagcctgac
ttctcccacatgcagtggatgcaagaggtcaacaagaaagggtacatccccagttacctg
gacaaggacgagttatgtgtagtatgtggggacaaagctacaggatatcactatcgctgt
atcacctgtgaaggttgcaagggtttcttccggcggacgatccagaagaacctgaacccg
acgtacgcgtgtaagtacgaggcgaagtgcattatcgataaggtgaccaggaaccagtgc
caggaatgtcgcttcaagaagtgcatcgctgtcggcatggcaacagacttggtgctggac
gatagcaagcggctcgccaagcggaagttgattgaggagaaccgtgagcggcggcggaag
gatgagctccagaagacggtgtgggaccggcctgagccgtcccaggaggagtgggacctg
attcgcatggtcacagaggcccacatgtcaactaacgcccagggcaaccactggaaacag
aaacgcaagttcttggtcgaggaagcaatgctacttaatgaaataacatgtaatttattc
tatacttctgaccagagtgcagtgggggtgaaggaaaccaagcccgaggacattggtcaa
gcatcggtcataaatgcacctgaagggagcaaagtggacattgaagccttcagtcagttt
acaaaaattatcacccccgccattacccgagtggtggactttgccaaaaagctgcctatg
ttctgtgagctgccttgtgaagaccagattatcctattgaaaggctgctgcatggagatc
atgtctttacgggcagccgttcgctacgaccccgagagcgagacgctgactcttaacggg
gagatggccgtgacccgcggccagctgaagaacggaggcctgggtgtagtgtcggacgcc
atctttgatttgggcgtgtccctgtcgtcgttccacctggacgactctgaggttgctctg
ctacaggccgtcatcctcctgtcctccgaccgtccggggctgaccagcgtggagcgtatt
gagcgctgtcaggaggagttccttctggcctttgaacattacatcaactaccgcaaacac
aaggtggcgcaattctggcccaagctgctgatgaaggtgacagacctgcggatgattggg
gcatgccacgcctcccgcttcctgcatatgaaggtggagtgccccaacgaactcttcccc
ccactcttcctggaggtctttgaggattga
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