Coregonus clupeaformis (lake whitefish): 121586560
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Entry
121586560 CDS
T08357
Name
(RefSeq) retinoic acid receptor alpha-A-like isoform X1
KO
K08528
retinoic acid receptor beta
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586560
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
cclu03310
]
121586560
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121586560
Nuclear receptors [BR:
cclu03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
121586560
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DUF4746
Motif
Other DBs
NCBI-GeneID:
121586560
NCBI-ProteinID:
XP_041759270
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Position
17:9376728..9516119
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AA seq
471 aa
AA seq
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MFDCMDVLAVSPGQMLDFYTSRPSSCMLQEKALKACFSGLAQRDWQHRRSAQSIETQSTS
SEELVPSPPSPLPPPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRD
KNCIINKVTRNRCQYCRLQKCFGVGMSKESVRNDRNKKKKESPKPELTENYELSAEQEAI
IEKIRKAHQETFPSLCQLGKYTTNSSAEQRVRLDLGLWDKFSELATKCIIKIVEFAKRVP
GFTGLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTD
LVFTFAHQLLPMEMDDTETGLLSAICLISGDRQDLEEPSKVDHLQEPLLEALKIYVRKRR
PSKPHMFPKALMKITDLRSISAKGAERVISLKMEIPGSMPPLIQEMLENSEGQDGQSSTQ
GEDGSSPKKGTPKRGKGGKPSPVSPDPSDSDGPTAAPEEEEEEEEEEEEDP
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattgtatggatgtgctagcggtgagcccgggacaaatgttggatttctacact
tcacgtccctcttcgtgcatgctgcaagagaaggcactgaaagcgtgcttcagcgggctc
gctcagagagactggcaacatcgccggagcgcacagtccatcgagacccagagcaccagt
tctgaggagctggtcccaagccccccatcccccctgcccccgccccgcgtctacaagccc
tgcttcgtgtgccaggacaagtcctcgggataccactatggtgtcagcgcctgcgagggc
tgcaagggttttttccgtagatccatccagaagaacatggtatacacgtgtcaccgggac
aagaactgcatcatcaacaaggtgaccaggaaccgctgtcagtactgccggctccagaag
tgctttggcgtgggcatgtccaaagagtctgtccggaacgaccgcaataagaagaagaag
gagagtcccaagccagagctgacagagaactacgagctgagtgcagaacaagaggccatc
atagagaagatacgcaaggctcatcaggagaccttcccatcgctctgccagctggggaaa
tacaccacgaactcaagtgcagaacaacgcgtgaggctggacctgggcctgtgggataag
ttcagtgagctggctactaagtgcattataaagattgtggagtttgccaaacgagtacct
ggttttacaggactcaccatagctgaccagatcacgctgcttaaagctgcctgccttgac
atactgattctacgtatctgtacgcggtacactccggaccaggacaccatgacgttctca
gacgggctgaccctgaaccggacccagatgcacaacgcaggcttcggcccgctcaccgac
ctggtgttcaccttcgcccaccagctgctgcccatggagatggacgacacagagacaggc
ctgctcagcgccatctgcctcatctctggagaccgtcaggacctggaggaaccctctaag
gtcgaccacctccaggagcctctactggaagctctgaagatctatgtgaggaagaggagg
cccagcaagccacacatgttccccaaggccctgatgaagatcactgacctccgcagcatc
agcgccaaaggtgcggagcgggtcatctcgctgaagatggagatccctggctccatgcct
cctctgatccaggagatgctggagaactcagagggccaagacggccagagcagcacccag
ggcgaggacggcagcagccccaagaagggcacccctaagaggggtaaggggggtaaaccc
tcccctgtgtcccctgacccctcagacagcgatgggcccacagcggcccctgaggaggag
gaggaggaggaggaggaggaggaagaggacccctag
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