Coregonus clupeaformis (lake whitefish): 121586588
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Entry
121586588 CDS
T08357
Symbol
irx1b
Name
(RefSeq) iroquois-class homeodomain protein IRX-1b
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586588 (irx1b)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121586588 (irx1b)
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Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
121586588
NCBI-ProteinID:
XP_041759335
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Position
17:11266177..11270454
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AA seq
453 aa
AA seq
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MSFSQLGYPQFLSGSQEVYGGDRAGSGRDGGAESGVNQAATAAAVSSMLGMYGNPWAAQN
YSAFLPYSGADLALISQMNAQYDLKDSPGVHPGGLAVHTGAGFYPYGQYGYGDPNRAKAA
TRETTSTLKAWLQEHQKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKVTWG
RSAEDRDGRIFSSDNEDEPEKHESEDEEDEEIDLESIDIDKVEENRGDQREREGEGKLTS
DSSSLESQRKLSVEALRGMEGPISLIKAPVGACKNAVDLSPNGPGCQRPPQNKPKIWSLA
ETATSPDSSHKPSPAASAPHAATSPSHHPALLSGHGIYTCQIGKQLHNWANAAFLSANSL
LGVRSLLGTANPAGPHMPLHGALKRQEARATQASGASATEDESGDESSESFSPKQDDDVN
IRRSGSPKSPFQLITDRSHHGTAQRALSTISTI
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtctttctcgcagctggggtacccccagtttctaagtggctcccaggaggtttatggg
ggcgaccgggccggctctggtcgggatggaggcgccgagagcggcgtgaatcaggcagct
accgccgctgctgttagctcgatgctggggatgtatgggaacccgtgggcggctcaaaac
tacagcgcgtttctcccctacagcggtgcagacctcgccctcatatcgcaaatgaacgct
cagtatgatctgaaggacagccccggagttcacccgggaggtctggctgtccacactggc
gcggggttctacccgtatggccagtacggctacggcgacccgaaccgagccaaggccgct
accagggagaccaccagcactctgaaggcctggctgcaggagcaccagaagaacccgtat
cccaccaagggagagaaaatcatgctggccatcatcaccaagatgacacttacacaggtg
tccacgtggttcgccaatgcgcgcaggcgtctgaagaaggagaacaaggtgacgtggggc
cgcagcgcggaggaccgggatggacggatcttcagtagtgacaatgaggacgagcctgag
aaacacgagagcgaggatgaagaggacgaggagatcgatttagagagtatcgacatcgat
aaggtcgaggagaaccgcggagatcagagggaaagggagggagaggggaagctgacatcg
gattcgagtagcttggagagccagaggaagctgtctgtggaagccctcagaggcatggag
ggtcctatttctctcatcaaggcgcctgttggtgcttgtaaaaacgcagtggatctttcc
cccaatggaccggggtgccagaggcccccacagaacaaacccaaaatctggtctctggcg
gagacggccacaagccccgacagttcacataaaccttccccggctgcctcagctcctcac
gcggccacgtctccctcccaccacccggccctactctcgggtcatggaatatacacttgc
cagatagggaagcagctccacaactgggccaacgcggcgttcctcagtgccaactctctg
ctgggcgtcaggtcgcttctcggcacggcaaacccagctggaccccacatgcctctccat
ggcgcgctgaagcgtcaggaagcaagggcgactcaggcttcaggggcatccgctacagag
gacgagagtggagatgagtcgtcggagagcttcagtccaaagcaagatgatgacgtgaat
attcgtaggtctggctcgccgaagtctcccttccagctgatcacggacagatctcaccac
ggaacggcgcagcgcgctctctcgaccatttccacaatatga
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