Coregonus clupeaformis (lake whitefish): 121586593
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Entry
121586593 CDS
T08357
Name
(RefSeq) protein transport protein Sec24C-like isoform X4
KO
K14007
protein transport protein SEC24
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121586593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586593
Membrane trafficking [BR:
cclu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121586593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_helical
Sec23_BS
zf-Sec23_Sec24
Gelsolin
Motif
Other DBs
NCBI-GeneID:
121586593
NCBI-ProteinID:
XP_041759381
LinkDB
All DBs
Position
1:12549040..12571189
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AA seq
1205 aa
AA seq
DB search
MNVNQQPPIASPYGQPQPGYGQPNYAPLGGGYPGPYGPYNGPATAYQPGAPPQGSARAPP
TSVPPPVSTPQAYSQYAQGDIQNGPPSMDHSMAQPAHRPPVSQLYSQGAMNLSGPQPSYP
QQYGVQPPMQQVTNQMSGMQIGSGPLTSAGPGYAPPPSSQPPISAAYSAAAPPSYTQAPP
PVSGSPSQPPPPSEPAAPQPYYSGPPPSHQQPFPSSSPYSGPPPSSQPRAPAVSQQQSFP
PGPPPPAQQPFPNSAPPPVSRASYFGPPPPIQHSFPPRGHPPSSQPGPFPPTFAPPAQYP
APQPPSQPGPPPFHSGPPPQGPMPPPSMSQQQANHLPPGPIQQPPMQQPPQPGMQGGYPP
QQNGAFGQPVGPQTGYAGPQYPGQQNYGAGPAPAPAQKRLDPDSIPSPQASELPAVQKSR
HRIDPDAVPSPIQVIEDDRANKSSEPFTTGVKGQTPPLVTTNFQVKDQGNASPRFIRCTA
YNMPCTADMAKQSQVPLAAVIKPLAVLPPDETLPYIVDHGEAGPIRCNRCKAYMCPYMQF
IEGGRRFQCGFCSCVTEVPPHYFQHLDHTGKRVDCYDRPELSLGSYEFVATVDYCKNNKL
PQPPAFVFFIDVSYNAVKSGMVNIVCQELKTLLDYLPRENPEADSVVRVGFVTYNKVLHF
YNVKSSLAQPQMMVVSDVSDMFLPLLDGFLVNVNDSRMVIESLLDQIPEMFEDTRETETV
FGPVIQAGLEALKAADCAGKLFVFHSSLPIAEAPGKLKNREDKKLVGTDKEKSLFQPQSG
FYSNLSKECVAQGCCVDLFLFPNQYVDVATLGVVPVSTGGSVYKYTYFQAETDREQFLND
LRRDVQKPMGFDAVMRVRTSTGIRATDFFGSFFMSNTTDVELAGLDCDKTVTVEFRHDDK
LSEDTGALMQCAVLYTSCSGQRRLRVHNMAVNCCSQLADLYRNCETDTIINFISKYAYRS
ILNTPTKTVRDTMVNQCAQILACYRKNCASPSSAGQVSQSLSSPLGQLILPECMKLLPVY
LNCVLKSDVLQPGADISLDDRAYLRQLLSCMDVSESHIFFYPRLLPLVKLDGGSLPMAVR
NSEERLSKGGVYLLETGLHLFLWVGANAQQELLSNIFGTPTFSQIDPNMTSLPELDNPFS
QRLREIIDSFRSQRSRYMKLMVVKQEDKAELIFKHYLCEDKSVSGGASYVDFLCHMHKEI
RQLLS
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtgaaccagcagcctcccattgcgtctccctacggccaaccccagcctggctac
ggccagcccaactacgctcccctgggaggcggctaccctggcccctacggaccctacaac
ggccccgctacagcctaccagcctggggctccaccacaaggatctgccagggccccccct
acctctgtcccccctcctgtctccactccccaggcctactcccagtatgcccagggagac
attcagaatggacccccatctatggatcactctatggctcagccagctcacaggcctcca
gtgtctcagctgtatagccaaggcgctatgaacttgtctggcccacaaccctcctacccc
cagcagtacggggtgcagccccctatgcaacaggtgaccaatcagatgtcagggatgcag
atcggttcaggcccccttacctctgctgggccaggatatgctccgcctcccagctcccag
cctccaatcagtgctgcctactccgctgcagcacctccctcctatacacaagctcctccc
ccagtgtctggctccccctcccagcctccccctcccagtgagcctgcagccccccaacct
tactatagtgggcctcctccctctcaccaacaacccttcccctcctcctctccatactcg
ggccctcccccttccagccaacctcgggcccctgcagtctctcaacagcagtccttccca
cctggcccccctccccctgctcagcaacccttccccaactctgcccctcctccagtatcc
cgggcctcatactttggcccccctcctcccatccagcactccttcccccccagaggccac
cctccctcctcccaacctggtcctttcccacctacctttgcaccccctgcccagtaccct
gccccccagcccccgtcccaacccgggccccctcccttccactctggcccccctcctcaa
ggccccatgccacctccctccatgtcccagcagcaggccaaccaccttccccccggcccc
atacagcagccccccatgcagcagcctcctcagcctggcatgcagggaggatacccaccc
cagcagaatggtgcgtttgggcagcccgtaggcccccagactggctatgcaggtccgcag
tatcccgggcaacagaactacggagcaggccctgcccctgcacccgcacagaagagactg
gaccctgactccatccccagcccgcaagcgtctgagctgccggctgtgcagaaatccaga
catagaatagacccagatgctgtccccagtccaatccaggtgattgaggacgaccgggcc
aacaagagcagcgagccgttcaccacgggggtcaaaggtcagactccgcccctggtcacc
accaacttccaggtgaaagaccagggcaacgccagcccgcggttcatccgctgtacggcc
tacaacatgccctgcacggccgacatggccaaacagtcccaggtccccctggccgctgta
atcaaacctctagccgtgctgccccccgacgagaccctgccgtacatcgtggaccatggg
gaggccggtcctatccgctgtaaccgctgtaaggcctacatgtgtccctacatgcagttc
atcgagggcggacgccgcttccagtgtggcttctgcagctgcgtcacagaggtgcctccc
cactactttcaacatctggaccacacagggaagagggtggactgctacgaccggccagag
ctctcgctgggcagctacgagtttgtggccaccgtcgactactgtaagaacaataagctc
ccccagcccccagcgtttgtctttttcatcgatgtgtcttacaacgccgtgaagagtggc
atggtcaacatcgtctgtcaggaactcaaaactctactggactacctgcccagggagaat
ccagaggctgactcggtggtgcgtgtgggttttgtgacctacaacaaggtgttgcatttc
tacaacgtcaagtccagcctggcccagccccagatgatggtggtcagtgacgtcagtgac
atgttcctccctctgctcgatggcttcctggtcaacgtcaacgacagccggatggtcatc
gagagtttgctagaccagattccggagatgtttgaagacaccagggagactgagacggtg
tttggaccagtcatccaggcaggactggaggcattgaaggctgcagactgtgccgggaaa
ctgtttgtgttccactccagtctgcccatcgctgaggctcctgggaaactgaagaacaga
gaggacaagaaactggtgggaacagacaaggagaagtctctgttccagccccagtctggt
ttctatagtaacctgtctaaggagtgtgtagcccagggctgctgtgtggacctcttcctg
ttcccaaaccagtacgtcgacgtggcaacgcttggcgtggtgcccgtctccactgggggc
tccgtctacaaatacacctacttccaggctgagacggaccgcgagcagttcctgaatgat
ctgcggcgagacgttcagaagccgatgggcttcgacgctgtcatgagggtccgaacgagc
acaggtatccgagcgacagatttcttcggctcgttcttcatgagtaacacaacagacgtc
gagctggcaggactggactgtgacaagactgttactgtggaattccgccatgatgacaag
ctcagcgaggacaccggcgcactcatgcagtgtgcggtgttgtacaccagctgtagtggt
cagcggcgtctgcgggtccacaacatggcggtcaactgctgctcccagctcgccgacctc
taccggaactgtgagacggacaccatcatcaacttcatctcgaagtatgcgtaccgcagc
atattgaacacccccaccaagactgtgagagacaccatggtgaaccagtgtgcccagatt
ctggcctgctaccgcaagaactgtgccagcccctcgtctgccggacaggtcagtcagtca
ctcagctcccctcttggacagctgatcctaccagagtgtatgaaactgctgccagtctat
ttgaactgcgtgttgaagagtgacgtgctgcaaccgggagctgacatctcattagacgac
agagcctacctgagacagctgctcagctgtatggacgtatcagagagccacatcttcttc
tatccccgcctacttcccctggtgaagttggatggagggtcgttgcccatggcagtgcgt
aactcggaggagcgcctgtcaaagggcggagtctatctcctggagacagggctccacctg
ttcctgtgggtgggagccaatgcccagcaggagctgctcagcaacatattcggcacgccc
accttcagccagatagaccccaacatgacgagtctgccggagctggacaacccgttctcc
cagagactccgagagatcatcgactccttcagatcacaacgatcacgatacatgaagttg
atggtggtgaagcaggaggacaaggcggagctaatctttaaacactacctgtgcgaggac
aagagcgtcagcggaggagcttcctacgtcgacttcctgtgtcacatgcacaaggagatc
cgccagctgctcagctag
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