Coregonus clupeaformis (lake whitefish): 121586601
Help
Entry
121586601 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586601
04121 Ubiquitin system [BR:
cclu04121
]
121586601
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121586601
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121586601
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
121586601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
Ig_GEX2_N
Motif
Other DBs
NCBI-GeneID:
121586601
NCBI-ProteinID:
XP_041759361
LinkDB
All DBs
Position
17:11985753..12027539
Genome browser
AA seq
839 aa
AA seq
DB search
MASFSDSDLQTCPLCKELCGSSSTPISSNSSTSSSSSHSSLSSSSSRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLCCPTCNQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQLQLGQN
TNGHHRGVGGGSIPGFHHPHGGLLRPHRLGEPQCSSCDEGNPASSHCLDCQEYLCDNCVR
AHQRVRLTKDHFIERLAESLHQHQADRGKASPIGGGGEGGGGVGVSLAQSFHYNFSLLPL
FQDRMSFCQNHDNEVFLFFCETCSVPICRECSVGRHMGHSFVYLQDAVQDSRAITIQLLA
DAQQGRQAVQLSMEKAQAIVEQVEIKAKVVQTEVKNIILRHKKALEERECQLLWKVEKIR
QLKAKSLYLQVEKLHQNLTKLDSTIAAVTQVLDEGRHLDVLLARERMLTQIQELKSLRGL
LQPQEDDRFMFMPPDQALYIAIQSMGLISSGAFATVTKAHGEGLKTALRGKPASFTVIGY
DHDGEPRLSGGDAVSAVVMAAADGNLSAAEVSDHLNGSYTVSYLPKAEGEYLVSVLVCNQ
HIMGSPFKVLVKSGRSYGALGSPVSAFGGEGEGEGQLCRPWGISVDKEGYVVVADRSNNR
VQIFKPCGAFYHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFDGQFMLK
FGEKGTKNGQFNYPWDVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGALWKHFDS
PRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRII
VADSRNHRVQVFEPNGNFLCKFGMQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctgcaaacctgtcctctctgcaaggagctctgcggc
tcctcctccactcctatttcctccaactcctccacctcatcctcctcctctcattcctcc
ttgtcgtcctcctcctcccggcgcctccatgttctcccctgcctccacgctttctgcagg
cagtgtctggagggccagcgcagccctggggaccctctcaaactctgctgccccacctgc
aatcagaaggtctccatctccgaagccggagtggactccctcccttcctccaacttcctc
ttcagtaaccttctggacgtggtggtgagctccgaggagcaactccaactcggccagaat
acgaacggccaccaccggggggtcggcgggggctccatacccgggttccaccacccccac
ggcgggctcctccgcccacaccgcctgggagagccccaatgcagctcctgtgacgagggg
aacccggccagctcccactgcctggactgccaggagtacctgtgtgataactgcgtccgc
gcccaccagagggtccggctgaccaaggaccacttcatcgagaggctggctgagagcctg
caccagcaccaagcggatcgaggcaaggccagccccatcggaggaggtggagaaggaggg
ggaggtgtgggcgtctccctggcccagtcctttcactacaacttctcactgctacctttg
ttccaggacaggatgagcttctgtcagaaccacgacaacgaggtgtttctgtttttctgt
gagacgtgctcggtgcctatctgtagggagtgtagtgtgggcagacacatgggccacagc
ttcgtctatctacaggacgctgtccaggactccagagccatcaccatccagctactggcc
gatgcacagcaaggaagacaggctgtacagctgagtatggagaaagcccaggccatagtg
gagcaggttgagatcaaggccaaggtggttcagacagaggtgaagaacatcatcctcaga
cacaagaaagccctggaagagagagagtgtcagctactctggaaggttgagaaaatccgc
cagctgaaagccaagtccctgtacctgcaggtagagaagctgcatcagaacctgaccaag
ctggacagcaccattgcagccgtcactcaggtcctggacgagggccgtcacctggacgtg
ctgctggccagagaacgtatgctgacccagatccaggagctcaagtctctcagaggactg
ctgcagccacaggaggatgacaggttcatgttcatgcctccagaccaggccctgtacata
gccatccagtccatggggctgatcagtagtggagcgttcgctaccgtcaccaaagctcac
ggcgagggtctaaagactgcactccgcggcaagcctgcctccttcaccgtgattggctac
gaccatgacggggagccccgcctctcgggcggtgacgcggtgtcagcagtagtgatggca
gcggcggatggtaacctgtcggctgcggaggtgtctgaccacctgaacgggtcgtacaca
gtcagctacctgcccaaagcagagggagaatatctggtgtcagttctggtctgcaaccag
cacatcatgggcagcccctttaaggtgctggtgaagtctgggcggagctacggcgccctg
gggtccccggtgtctgcgttcggtggtgagggggagggggaagggcagctgtgtcgcccc
tgggggatcagcgtggacaaggagggatacgtggtcgtggccgaccgcagtaacaaccgc
gtacagatctttaagccgtgcggtgcgttctaccacaagtttggctccctgggttctcgc
cccggtcagtttgaccgtccagcgggcgtggcgtgcgacagccaacgccggatcatcgtg
gcggacaaagacaaccaccgtgtgcaggtgttcaccttcgacgggcagttcatgctgaag
ttcggcgagaagggcactaagaacgggcagttcaactacccctgggatgtggcggtgaat
tctgcagggaagatactggtctctgacaccaggaaccaccgcgtccagctctttggccct
gatggctccttcatcaacaaatatggctttgagggcgccctgtggaaacactttgattca
ccgcgcggcgtcgccttcaaccacgaggaccacctggtcgtcaccgacttcaacaaccac
cgtctgctggtgatccggccggactgccagtctgcccggttcctgggctcagagggaacc
ggtaacgggcagttcctgcgtccacagggtgtggctgtggaccaggagaaccggatcatt
gtggccgactctaggaaccaccgggtgcaggtattcgagccgaacgggaacttcttatgt
aaatttggcatgcaggggagtggcttcggacagatggaccgcccctccggtgttgctgtg
acgcccgacggagtcatcgtggtcgtcgacttcggaaacaaccgtatcctcaagttctga
DBGET
integrated database retrieval system
