Coregonus clupeaformis (lake whitefish): 121586613
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Entry
121586613 CDS
T08357
Symbol
sdc3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04514
Cell adhesion molecules
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121586613 (sdc3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121586613 (sdc3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cclu00535
]
121586613 (sdc3)
Proteoglycans [BR:
cclu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
121586613 (sdc3)
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Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
121586613
NCBI-ProteinID:
XP_045082514
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Position
17:45904711..45943599
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AA seq
405 aa
AA seq
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MKLRRCLMTILAALLAHSALGQTWDTEGSSRDEFYDDEDLFSGSGSGFPEMKVNPTAVGV
SFTTEEPLPLSTTQATGPAPSAPPAAEPNPNPDALPTPLPTEGEGESGVEWERGRERERE
RVREMRERERERQREIERERERERERERARAAQTTISPHGAAAVPMVTTSTATPLAESAA
PSSGVEDLVTTEEDEDVYLSPDPTTSMPMETTTEEEEEEEVTTAETETTPLPETTAPPIT
TGPALTERSSSAPFKPRVLVTTPTKAAPTEMSTRPQQPSTTMNNELGVNGPSGDFEIREE
DRRQGNEVVGRGRGMETGAEPDLIGNTINTGSSAAQLPQKNILERKEVLIAVIVGGVVGA
LFAAFLVMLLVYRMKKKDEGSYTLEEPKQATVTYQKADKQEEFYA
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcggcggtgtctgatgactatccttgcggcgctgctcgctcactccgcgctg
ggtcagacctgggatacagaaggttcttctagagatgagttctatgatgatgaagacctc
ttctcaggctccggatctggctttccagagatgaaggtcaaccctacagcggtgggtgtg
tctttcaccactgaggagcccctccccctttccaccacccaggccactggccccgccccc
tcggccccacctgcagccgagcccaatcccaaccctgacgctctccccaccccactaccc
actgagggagagggggagagtggggtagagtgggagagagggagggagagggaaagagag
agagtaagggagatgagagaacgagaaagagagaggcaacgggaaatagagagggaacga
gaaagagaacgtgaaagagaaagagcgagagccgcccagactaccatctcaccccacggc
gctgcggctgttcccatggtgaccaccagcacagcgacgcctctggcggagagcgcggca
ccctctagtggtgtggaggacctggtcaccacagaagaggacgaggatgtctacctgtcc
ccagaccccaccaccagtatgcctatggagaccactacggaagaagaagaagaggaagaa
gtgaccactgcagagacagagaccacacccctcccagagacaacagctccacccattacg
actggcccagccttaactgagaggtctagctccgcccccttcaagcccagggttctggtg
accacgcctactaaagccgcgcccacagagatgagcacacgcccacagcagccttctacg
acaatgaataatgagttaggggttaatggacccagtggagactttgagatccgggaggag
gaccgtcgccagggcaacgaggttgttgggcgtggccgtggcatggagactggggcagaa
cctgatctgattggcaacacaattaacacaggaagttctgccgctcaacttcctcagaag
aacatcctggagaggaaggaggttctgatagcggtgatagtgggaggcgtggtgggggcc
ctgttcgcagcgttcctggtcatgctgctggtgtacaggatgaagaagaaggatgaaggc
agctacacgctggaggaacccaagcaggccactgtcacctaccagaaagctgacaaacag
gaggagttctacgcataa
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