Coregonus clupeaformis (lake whitefish): 121586622
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Entry
121586622 CDS
T08357
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03250
Viral life cycle - HIV-1
cclu03272
Virion - Hepatitis viruses
cclu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
121586622
03272 Virion - Hepatitis viruses
121586622
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
121586622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586622
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121586622
Membrane trafficking [BR:
cclu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
121586622
Exosome [BR:
cclu04147
]
Exosomal proteins
Proteins found in most exosomes
121586622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
DUF2226
AAT
COG3_N
Motif
Other DBs
NCBI-GeneID:
121586622
NCBI-ProteinID:
XP_041759395
LinkDB
All DBs
Position
17:45736837..45754622
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AA seq
887 aa
AA seq
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MATFISVPLKKSSEVDLVKPLSKFVTASYPTGEDQAEYIRSVEELNKLRKSALGRPLDKH
ESSLEILMRYYDQLCAVEPKFPFSENQLCLTFTWKDAFDKGSLFGGSVKLALASLGYEKT
CVLFNGAALASQIASEQNLDSDEGLKAAAKYYQLASGAFGHIKDTVLSALNREPTMDISP
ETVGTLSLIMLAQAQEVFFLKATSDKMKDAIIAKLANQAADFYSDAIKQCQYKENLPKYI
YFQEVFPVLAAKHCIMQANAELHQSILAKQKKHFGEEIARLQHATELVKTVASRYDEYVS
VKDLSDKISRALTAAKKDNDFIYHDRVPEVKDLEHIGKAALVKATAITPPLSAKFTDLFE
KMVPMAVQQSMSVYSQRKAETVNRLVGTMREATNLCNGVLASLNLPAALEDLSGDSIPQS
IVEKAHAIVQQGGLQSIEQLIRDLPELLTRNREILDESLKMLDDEESTDSELRSKFSQRW
NRTPSGDLYKPLRAEGGNFRSVLDKAVQADQVVKERYNTHCEMIALLCKPEAELTAAIPS
ANPAKTLQGSEVVSVLRSQLSQLEEVKREREVLEAEIKGVTFDMSSSFLTALAQDGAINE
EALSMSQLDQSYGSYSQRVQASLRSQEELLGNVQASHQEFSSLKQSNSEANDREEVLKKL
ASAHDSYVEITNNLREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIARE
PSAPSFSVPAYQTNPTPTAAGPTPAPRTVFQPQQPQAKAQPPERPPPPAFTTQAASAPGN
PPSNQPQPVNPPPMAPPSMAQGPPYPTYQGYPGYAYQMPMGYNPYAAYGQYNMPPTMQPN
MQPYVPYQQAPAPGQGSYPGAAPTQQHPYIYQQQPQQPPPQPYYPQQ
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttttatttctgtcccgttaaagaagtcgtctgaagtcgacctagttaaaccg
ctctcgaaatttgttacggcgtcatacccgacgggcgaggatcaagctgagtacatccga
tctgtggaggagttgaacaagctgcgcaagagtgctctggggaggccgctcgacaaacac
gaaagctcgctggaaatcctcatgaggtactatgatcagctgtgtgccgtggagcccaag
tttcccttctctgaaaaccagctgtgtctaaccttcacatggaaagatgcctttgataag
ggctcactgttcgggggctcagtcaaactagccctggccagtctgggctatgagaagacg
tgtgtgttgttcaatggagcagcgttggccagtcagatcgcttcagaacagaacctggac
agcgatgaaggactgaaggccgcagccaaatactaccagttggcgagtggagcatttggt
cacattaaggacacagtgctgtcggctctgaacagagagcctactatggacatatctcct
gagaccgtaggaaccctcagtctcatcatgctggctcaggcacaggaagtcttctttctc
aaggctacgtcagataagatgaaggacgccatcatcgctaaactggccaatcaggcagca
gatttctacagcgacgccatcaagcagtgtcagtacaaagagaacctgcccaagtatatt
tatttccaggaggtgtttccggtgctggcagctaaacactgcatcatgcaggccaacgct
gagctgcaccagtctatcctcgccaagcagaagaaacactttggggaggagatcgctcgc
ctgcagcatgctacagagctggtgaagacagtagcatctcgctatgatgagtacgtcagt
gtgaaagaccttagtgataagatcagccgtgctctgaccgccgctaagaaggacaacgac
ttcatctaccacgaccgcgtccctgaggtcaaggacctggaacacatcggcaaggcagcg
ctggtcaaggctaccgcaatcacacctccgctcagcgccaagttcactgacttgtttgag
aagatggtgcccatggcggtgcagcagagtatgagtgtgtacagccagaggaaggctgag
actgtcaacagactggtgggaaccatgagggaagctaccaacctctgcaacggtgtcctg
gcgtctctgaacctgcctgcggctctggaggacctgtctggagattctatcccacaatcc
attgttgaaaaggcccacgccatcgtccagcagggggggctgcagagcatagaacaactg
atccgagacctgccggaactactgacacgcaacagagagatcctggatgagtctctgaag
atgctggatgatgaggagtcgacagacagcgagctgagatccaagttcagccaacgctgg
aacagaactccctctggagacctctacaaaccacttagagcagagggtggtaacttccgt
agtgttttggacaaggcagtgcaggctgaccaggtggtcaaggagcgttataacacacac
tgtgagatgatcgctctgctctgtaaacctgaggctgaactcaccgctgccataccttca
gccaaccctgctaagacactgcagggcagcgaggttgtgagtgtgttgcgttcccagctg
tcccagctagaggaggtgaagagagagagggaggtgctggaggcggagattaagggcgtg
acctttgatatgtcctccagcttcctgacggctctggctcaggacggggccatcaatgag
gaggcactatcaatgagccagctggaccaatcatacggcagctacagccagagggttcag
gccagcctccgctctcaggaagagctgttgggcaatgtgcaggcatctcaccaggagttc
tccagtctgaagcagtccaactcggaggctaatgatcgtgaggaggtgttgaagaagctg
gcctcggcccacgacagctacgtcgagatcaccaacaacctcagagagggcaccaagttt
tacaatgacctcacagagatcctgctgaagttccagaacaagtgcagtgacatcgtcttt
gcccgcaagacagaacgggatgaactactgaaggagttgcagcagagcatcgccagggag
cccagcgccccgtccttctctgtccccgcctaccagactaaccccacccccaccgccgcc
ggaccaacccccgcacctaggaccgtcttccagccccagcagccccaggcgaaggcccag
ccacccgagcggccccctccccctgccttcactacccaggccgcctccgcaccaggcaac
cctcccagtaaccagcctcaaccagtaaaccccccacccatggcccctccctcaatggcc
cagggaccgccttaccccacataccagggataccccgggtatgcctaccagatgcctatg
ggttataacccgtatgcagcgtacggccagtacaacatgccccccactatgcagcccaac
atgcagccctacgtcccctatcagcaggccccagcacccggacaagggagctaccccggg
gccgcccccacacagcagcacccctacatctaccaacagcagccccagcaaccaccacca
cagccatactacccacaacaataa
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