Coregonus clupeaformis (lake whitefish): 121586722
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Entry
121586722 CDS
T08357
Name
(RefSeq) ribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586722
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121586722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
121586722
NCBI-ProteinID:
XP_041759591
LinkDB
All DBs
Position
Unknown
AA seq
679 aa
AA seq
DB search
MDQAFPSLQTPASGPFEPDPGELQLRVDFFRKLGYSPMEVRAALLKLGLSTDTNSVLGEL
VSSGASTGTSNSTIPESGEDTTGPISHTGSSMASSRTHGPQRDRPVSLLEDRRDTDSGLK
PIVIDGSNVAMSHGNKEVFSCRGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQ
HILVELEKKKIVVFTPSRRVGGKRVVCYDDRFIVKLAYESDGVIVSNDTYRDLQGERPEW
KRCIEERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKKPLLPEHKRQLCPYGKKCTYGV
KCKFYHPERTHQSHCSLADELREKARLSSVKEDRNPMMSHLRDPQSDPGPFPSYSLENDL
EHRLTLEHRGSLREGPKSQVTENMLLYWDGPRSSRNQQARSPTAVGQGQMDWPSMPNMPS
MLPPSTTSDLPYASISHERLDSGFGSYESQSQYSDVSQGHSKAFRPRQQQQQQGFPSGSR
HPGMHPERLAQDSPRSCRCCFNLAPSTGPQQQHHSNPLQTHSQSQPRYDTYSPPLFPPNM
HHQHHYSLPCNFQQGGVGEHHFHHHQHPQKYWSDPFHGGVPQARASCSLPPGPHLHHPPT
PHKAPHSCSSYGDQQEHHSWAQPPPPSAFDPEREELRKKLQAIFNPHQVDSVMGMFPHLM
DAQKLAAEILNLKSQGGAF
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagcctccagaccccagcctcgggtccatttgaacccgaccca
ggagagctccagctcagagtggacttcttcagaaagttgggctactcccccatggaggta
cgggccgccctgctgaagctaggcctgagtacagacaccaactctgtactgggggagctg
gtcagcagcggagccagcactggtacttctaactcaaccatccctgagagtggtgaagat
actactggccccataagccacacaggctccagcatggcctcctctaggacccatggcccc
cagagagacagaccagtctcattactggaagacaggagggacacagacagtggactgaaa
cctatcgtcattgacggcagcaatgtggccatgagtcatggtaacaaggaagtgttctcc
tgtagaggaattgagttggcagtgatctatttcctggatagaggtcactcaaccgtcatt
gtgtttgtgccctcctggcgcaaggagcagcccaggcctgatgttcccatcacagaccaa
cacattctagtggagctggagaagaagaagatagttgtcttcactccctcgagacgcgtc
ggtggtaaacgggtggtctgctacgatgaccgttttatcgtgaagctggcctacgagtcg
gacggtgtgatcgtgtccaacgacacctatagggacctccagggagagcgtccggagtgg
aagcgctgtatcgaggagaggctgctcatgtactctttcgtcaatgacaaattcatgcct
ccagatgacccgcttggtcgtcatggtcctagtctggataacttcctgaggaagaagcct
ctgctgccagaacacaagcgccaactctgtccttatggtaaaaagtgcacctatggcgta
aagtgtaagttttaccacccagagcgtactcaccaatcccactgctcgttggctgacgag
ctcagggagaaggccaggctctcctctgtaaaagaggaccggaatcccatgatgtcacac
ctgagggacccccagtccgaccctggcccctttccctcctattctctggagaacgacctg
gagcacaggctgacattggagcaccgcggttccctgagggagggtcccaagagccaagta
actgagaacatgttgctgtactgggatgggccacgctccagtaggaaccagcaggcccgc
agccccacagcagtaggccaaggacagatggactggcccagtatgcccaatatgcccagt
atgctccccccctccactactagtgacctcccctatgccagcatctcccatgagcgcctg
gactctggttttggctcctatgagagccagagccagtactcggatgtgtcccaaggccac
agcaaggccttcaggcccaggcagcagcagcaacagcagggcttcccctctggttccaga
catccaggcatgcatccggagaggctggcccaggacagcccccggtcctgcaggtgttgt
ttcaatttggctccctccacaggtccccagcagcagcaccacagcaacccactacagacc
cattcccaatcccagccgaggtatgacacctactcgccccctctgttcccacccaacatg
caccaccagcaccactacagcctcccctgcaacttccagcaaggcggggtgggggaacat
catttccaccaccatcagcacccccagaagtactggtcagaccccttccatggcggggtc
ccccaggctagggcgtcctgtagcctcccccccggcccccacctccatcacccccctacc
ccgcacaaggccccccactcatgctcctcttacggggatcagcaggaacaccactcctgg
gcccagccacctccaccttctgcctttgacccagagagagaggagctccgtaagaaactg
caggccatcttcaacccccaccaggtggattcggtcatggggatgttccctcacctgatg
gacgcccagaagctggctgcagagatcctcaacctcaaatctcagggaggggccttctga
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