Coregonus clupeaformis (lake whitefish): 121586746
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Entry
121586746 CDS
T08357
Name
(RefSeq) syndetin-like
KO
K23288
syndetin
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121586746
Membrane trafficking [BR:
cclu04131
]
Protein recycling
Others
EARP complex
121586746
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
121586746
NCBI-ProteinID:
XP_041759629
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Position
17:complement(53586257..53877391)
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AA seq
958 aa
AA seq
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MQKIKSLMARQGLKSPQESMADLSPVETFRIPSKEELREMREQPVDSQAEQEIINSIQEI
YYSNDSFHMVQHELEKLPPELNLQELEEYRDKLKRQQAAVSKKVAHLILEKQPSYVKELE
RVTSLQTNLQLAAVICTNARRQLSVSKQDFTESNLGLLANHRRRQLLTGLLKSLRTIKTM
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVSHYTRVQLAYTFLGKSQTAMDQVHMHFTQAIHNTVFQVVLGYVELCAGNA
DTRFQKMQYRDLCTHITPDSYVPCLSDLCKALWEVMLSYHRTMQWHEEHNKEEAATATDE
TGSADTEEAVVDHSYVKKKLEHGLNRIWQEVQLKVKAYLLGTDMSNFKYDDFIVVLDVIS
RLMQVGEEFCGSKSELLQESIKCQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFNI
TQLHEFKFLGQYRSPSVSPNRQVLSSQDQEVLSLFEHFSQEGNPFERHIDNEETEDVLAS
NGCESDELERCVYQDYDSDSDVPDELKQDYVDEQTGDIPLKSRKKSDYSLNKGANAPILT
NTTLNVIRLVGKYMQMMNILKPIAFEAVHCVSQLFDYYLYAVYAFFGRNDMYESSGLGLI
SSRLRTTLNRIQERLIQMESLGEGGSSVHGCPVEERKEKVPSPHLSQLVVLTASETLYGL
AQRVVATESLVFLAEQFEFLQSHLDTMMPAAKKPFLQQFYSQTVSTASELRKPIYWVVAA
KALDYEQMLLLMAGVKWDIREIMSQHNVYVDVLLKEFEELSKRLGDVSRHVQIPLPVSNV
LWEHCIRLANRTLVEGYGNVKKCSNEGRALMQLDFQQFLMKLEKLTDMRPIPDKDFVETY
IKAYYLTENDMEEFIKNHREYSMKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagataaagtcacttatggcccggcagggtctgaaaagcccacaggagagcatg
gcagacctcagccctgtggagaccttcaggatcccaagcaaggaggagttgagggagatg
agggagcagcccgtcgactcccaggcggagcaggagatcattaacagcatccaggagatc
tactactccaacgactccttccacatggtgcagcacgagctggagaaactcccacctgag
ctgaacctgcaggagctggaggagtacagagacaaactgaagagacaacaggcagcggtt
tccaaaaaggttgcccatcttatcctggagaagcagccgtcctatgtcaaggagctggag
agggtgacgtcattacaaaccaacctacagctggctgcagtgatatgcaccaatgctagg
aggcagctgagtgtttccaagcaggacttcaccgagtccaacctgggcctcctagccaat
cataggaggagacagctgctcacaggactgctgaagtcactgaggaccatcaagaccatg
caaaggactgatgttagactcagtgagatgctggaggaggaggactatccaggtgccatc
cagttgtgtctggaatgtcagaaggctgccagcacattcaaacactacagctgcataagt
gagttgaattccaagctacaagacactctggagcagatcgaggagcagctggatgtggcc
ctgtcaaaaacctgcaagcactttgacgtctcccactacaccagagttcagctggcatac
accttcctgggaaaaagccagacggccatggaccaggtccacatgcacttcacccaggcc
atccacaacactgtgttccaggtggttctgggatacgtggagctctgcgctggcaacgcc
gacaccaggttccagaagatgcagtacagggacctctgcacgcacatcactccagacagt
tacgttccctgcctgagcgacctgtgcaaggcattatgggaggtgatgctcagctatcac
cggaccatgcagtggcacgaggagcacaacaaggaggaggctgcaaccgccacagatgag
acgggttctgcagacaccgaggaggcggttgtggaccacagctatgtgaagaagaagctg
gagcatggactcaatcgaatctggcaggaagtccagctgaaagtgaaagcctatctgctt
gggacagacatgtccaacttcaaatacgatgacttcattgtggtcctggatgttatcagc
aggctgatgcaagtgggggaggagttctgtggtagtaagtccgagttgctgcaggagtcc
attaaatgtcaaagtgtcaactacttcaagaactatcacaggacgcgcctggaggagttg
cggatgtttctggagaacgagacgtgggaactgtgtcctgtcaagtctaacttcaacatc
actcagctccacgagtttaagttcttgggtcagtaccggtccccctcagtgtctcccaat
agacaggtgttgtccagccaggaccaggaagtcctgtctctttttgagcacttcagccag
gaggggaacccttttgagaggcacatcgacaacgaggagactgaggacgtgctggcctcc
aatggatgtgagtcagatgagctggagaggtgtgtgtaccaggactacgacagtgacagt
gacgtccctgatgaactcaaacaggactacgtggacgagcagaccggagacatccctctc
aagagcaggaagaagtcagactacagtcttaacaagggcgccaatgcgcccatcctgacc
aacacaaccctcaatgtgatccgcctggtcggaaaatacatgcagatgatgaacattctg
aagcctatagcctttgaagccgtccactgtgtttcccagctgtttgattactacctgtat
gctgtctacgccttcttcggccgcaacgatatgtatgagtcatcaggtctgggtctgatc
agcagccgactgagaacaacactgaacagaatccaggagagactcatccaaatggagtct
ctgggggaaggcggctccagcgtccacggttgtccggtggaggagaggaaggagaaggta
cccagccctcacctcagccagctggttgtcctgacagccagcgagacactctacggcctt
gcccagagggtggtcgccacagagtcgctggtgtttctggctgagcagtttgagttcctt
cagtctcacctggatactatgatgcctgcagccaagaagccattcctccagcagttctac
tcacagactgtctccacggccagtgagctacgtaaacccatatactgggtcgtggcggcc
aaggctttagactacgaacagatgctgctgctgatggctggagttaagtgggacattagg
gagataatgtcgcagcacaacgtgtacgtggacgtcctgttaaaggagtttgaggagtta
agcaagaggctgggtgatgtgtccagacacgtccagatccctctgcctgtgtctaacgtc
ctgtgggaacactgcatccgtctggccaacaggactctggtggaaggctatggtaacgta
aagaagtgcagtaacgagggtcgggccctgatgcagctggacttccagcagttcctgatg
aagctggagaagctgacagacatgaggcccatccctgacaaggactttgtggagacctac
atcaaggcctactacctgactgagaatgacatggaggagtttatcaagaaccacagggag
tactccatgaagcagctgaccaacctggtgaacgtgtgtctgggctctcacatcaacaag
aaggcccggcagaaactcctggcagccatcgacgacatcgacagaccaaagagatag
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