Coregonus clupeaformis (lake whitefish): 121586791
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Entry
121586791 CDS
T08357
Name
(RefSeq) ribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121586791
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
121586791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_4
Omega-toxin
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
121586791
NCBI-ProteinID:
XP_041759717
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MKVEGSAIPKLRPLKDVFPWREFSYTARLSPTETHDTAGWLDTLTALNNPHPPHPICERM
HPSGTHCSAPEESRKTPTDPGEAQLDFYRKLGYSPAQVRTVLQKFGLNTDTNRVLGELVR
TGVSPEGMEKEWEKEGAPSTMSILVTRGETLSNLPLTPPPSREDATSEEGDALRPIVIDG
SNVAMSHGNKEVFSCLGIQLAVNFFLDRGHTDITVFVPSWRKEQPRPDVPITEQHILREL
ERKKIVVFTPSRRVAGKRVVCYDDRFIVKLAHESDGIIVSNDTYRDLQGERQEWKRFIEE
RLLMYSFVNDKFMPPDDPLGRHGPTLENFLRKVPRLPRKQPCPYGRKCTYGMKCKFYHPE
RANQSNRSLADELREKAKLSLSQHKHPNTGAGPANGLSLDENTAQKLTLEQWNGSLKKGH
ISENVLLLKGSHRSSRRSPAKKDKSNRHFMTDLDSALPSGSHSPTDLDSALPSGSHSPTD
LDSALPSGSQERLDSGLGSFESQASDPSRDHCDRYGTAGYRNCQSTPSMRQQLYSLPSNP
PCSCGSHPPQPLLGPSAGYQQHHSRGPASTHNPGMITYYPPYYLNYGAPMYPVGKHHYSH
PNDFQQQGSAHPPQQTYWSDPFGTYPQTLLSAAQEAKQRHWPFPQTQPHPHGEGREREEV
RKKLLAIFHRRLVDKAMDMFPQLMDPQRLAAEILTLQSQGL
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtagaaggcagtgctatcccaaagctgcgcccactcaaagatgtcttcccatgg
agagagttctcctacacagcccgtctgagccccacagagacccacgacacagctggatgg
ctcgacactctgactgccctcaacaatcctcatccaccccaccccatctgtgagagaatg
caccccagtggcacccactgctctgccccggaggagagccgcaagacccccacagaccct
ggagaggctcagctggacttctaccgtaaactgggctactccccagcgcaggtccggacc
gtgctgcagaagtttggcctgaacacagacactaacagggttctgggggagctggtgcgg
actggagtcagcccagaagggatggagaaggagtgggagaaggagggcgccccatctacc
atgtctatcctggtgacccgaggggagaccctcagtaacctgcccctcacccctccaccc
agccgggaggatgcaaccagtgaggagggagatgccctgagacccatagtgatcgatggg
agcaacgtggctatgagccacgggaacaaggaagtgttttcctgcctgggaatccagctg
gcggtaaacttcttcctggacagaggtcatactgatatcaccgtgtttgttccctcatgg
aggaaggagcagcctagaccagatgtccccatcacagaacaacacattttgcgtgagctg
gagaggaagaagatcgtggtgttcaccccttcgcggcgggtagcgggcaaacgggtggtc
tgctatgatgatcgcttcatcgtcaagctggcgcatgagtccgacggcatcatcgtgtcc
aacgacacctaccgtgaccttcagggcgagaggcaggagtggaagcgcttcattgaggag
aggctactcatgtactccttcgtcaatgacaagttcatgccccctgatgaccctctgggt
cgccatggtcccaccctggagaactttctacggaaggttcctcggttaccacggaaacag
ccatgtccttatggaaggaaatgcacttacgggatgaagtgtaaattctaccacccggaa
cgagccaaccaatctaatcgctctctggctgacgagctgcgggagaaggccaagctgtct
ttatcacaacataaacaccccaacacaggtgctggacctgccaatggcctttccctggac
gagaatacggctcagaaactgaccctagaacagtggaatggctccctgaagaaaggccac
atcagtgagaatgtgcttctgctcaagggaagccatcgttccagccggaggtccccagcc
aagaaggacaagtccaaccgacacttcatgaccgacctggactcggccctgcccagtggc
tctcactccccgaccgacctggactcggccctgcccagtggctctcactccccgaccgac
ctggactcggccctgcccagtggctctcaggagcgactagattctggtcttggctccttc
gagagccaagcgtctgacccctccagggaccactgtgaccgctatgggacggctgggtac
aggaactgccagtccacccccagtatgagacaacaactctattccctgcctagcaacccg
ccttgtagctgcggctctcatcctcctcagcctttactgggccccagcgcaggataccaa
caacatcacagcaggggcccagccagcacccacaacccaggcatgataacctactaccca
ccctattacctcaactatggggcaccaatgtatccagttggtaagcatcactacagccac
cccaatgacttccaacagcagggcagtgcccatcctccacagcagacctactggtccgat
ccattcgggacttatcctcagactctccttagcgctgctcaggaggcgaagcagagacac
tggcccttcccccagacacagccccacccccacggggagggcagggagagggaggaggtc
aggaagaagctgctggccatctttcaccgccgtctggtggacaaggccatggacatgttc
ccccagctcatggacccacagagattggctgctgagatcctcaccctgcagtctcagggc
ctgtga
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