Coregonus clupeaformis (lake whitefish): 121586853
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Entry
121586853 CDS
T08357
Name
(RefSeq) NLR family CARD domain-containing protein 3
KO
K22614
NLR family CARD domain-containing protein 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
cclu04054
]
121586853
Pattern recognition receptors [BR:
cclu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
121586853
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
NACHT
FISNA
PYRIN
PRY
NOD2_WH
LRR_6
SPRY
LRR_4
Motif
Other DBs
NCBI-GeneID:
121586853
NCBI-ProteinID:
XP_041759833
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All DBs
Position
1:complement(12577900..12583224)
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AA seq
1134 aa
AA seq
DB search
MATPAPVLDLLLAALEELVEKDMKTFHWYLSQSVPVGFPLIPKGHLENADRQDTVDKMVN
TYGHDGAMKISLEILRKMNQKDLTKTLTADHQEAEVEVAAASIPVPASPVYFTCTAQTGG
HVVAPSLSGCHIDGPVHFNIRVNSLDDEPIVPSQASPAHFTMFPPEPVNTEDNDERIKSC
QSKLKRNLRSRFFSVFEGLASHGNRQLLNKIYTELYITEAGNTEVNNEHEVRQIETTSRR
TATQETPIKCNDIFQPLLGQDQSIRTVLTKGVAGIGKTVSVQKFILDWADGKANQDLQLI
FPISFRELNLMRKKICSLIELLNGLFTETKETEISNYNNYQVLFVFDGLDECRLPLDFQN
NDMLFELTESTSVDVLLTNLIKGNLLPSAQLWITTRPAAANQIPPECVDQVTEVRGFNDP
QKEEYFRNRISDENLASRIITHIKTSRSLYIMCHIPIFCWISAIVLERKLGKAGSGEMPK
TLTQMYSHFLAFQEKDISLRLEGRGTPDPDWMRKNIMSLGKLAFQQLEKGNLIFYEEDLR
ECGINIGQASVYSGVCTEIFSEELTLCQGKVFCFVHLSIQEFMAALYVFLTFINDNVNLL
AKQQSFLRHFPFGNSTTTSFYKAAVDKALQSESGHLDLFLRFLLGLSLESNQILLRGLLT
QRISRSHTNKETVKCIKEKIKANPSPERCINLFHCLNELHDHSLVEEIQSYLSSGSLSRA
KLSPAQWSALVFVLLTSEEELDEFELKKYSRSEEGLLRLLPVVKASRAALLRRCKLTERC
CEALAAALSSNSSHQRELDLSDNDLQDSGVKLLSAGLASPQCKLETLSLRRCKLTERCCE
ALASALSSNSSHLRELDLSDNDLQDSGVKLLSAGLASPHCKLEVVRLSLCGVTEEGCALL
ASSLNSNPSHLRELDLSYNHPGDSGVKLLSAVLEDPHCKLEKLSVECCAEFRIRPGPQRY
ACELTLDPNTAHKELSLSDENRTVTRGKEQPFPDHPERFNYWRQVLCREGLDGHCYWEAE
CSGRALMGVAYRGISRRGEGHDCWLGRNAVSWSLNCSNDSYTAWHNDKSTAITIPSLSNR
VGVYLDWTAGTLSFYSVSSTLTHLHTFHSTFTEPLYPGFRLGWVDSSVSLCQVE
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggcaacacctgctcctgtcctggatctgctactggctgctctggaggagctggtcgaa
aaagacatgaagacatttcactggtacctgtctcagagtgtaccagttggctttcctctc
atccccaagggccacctggagaacgctgacaggcaggacaccgtggataagatggtgaac
acttacggccatgatggagctatgaagatctcactggaaatcctgaggaagatgaaccag
aaggatctcaccaagacgttaacggcagatcaccaagaggctgaggttgaggtagcagct
gcctcaattccagttcctgcctctcctgtctacttcacttgtacagctcagactggcggc
catgttgtggccccttcgctctccggctgccatattgatggtccagttcacttcaacatc
agagtcaactcattagacgacgagcccatagttccatctcaagcgtcacctgcccatttt
accatgtttccacctgaacctgtaaatactgaagacaacgatgaacgaatcaagagttgt
caaagtaaactcaaacgcaatctgcgtagtaggttcttcagtgtgtttgagggactggcc
agccacgggaacagacaacttctcaacaagatctacacagagctctacatcacagaggct
ggaaatacagaggtcaataatgaacatgaggtgagacagattgagacaacatccagaaga
acagcaacacaagaaacaccaatcaaatgcaacgacatctttcagcccttacttgggcaa
gatcaatccatcagaactgtgctgacgaagggagtcgctggcattgggaaaaccgtctca
gtgcagaagttcattctggactgggcagatggaaaagccaatcaagatctccagttgata
tttcctatttcttttcgagagctgaatttgatgagaaagaaaatatgtagtttgatcgaa
cttctcaatggcttatttacggaaacaaaagaaactgaaatatcaaactacaacaattat
caggtgctgtttgtctttgatggtctggatgagtgtcgacttcctctagacttccagaac
aatgacatgctgtttgaattaaccgagtcaacctcagtggatgtgctgctaacaaacctc
atcaaggggaatctgcttccctctgctcaactttggataaccaccagacctgcagcagcc
aatcaaatccctcctgagtgtgttgaccaggtgacagaggtacgagggttcaatgaccca
cagaaggaagagtacttcaggaatagaatcagcgatgagaacctggccagcagaatcatc
acacacataaagacatcaaggagcctctacatcatgtgccacatacccattttctgttgg
atctcagccattgttctggagaggaagctggggaaagcagggagtggagagatgccaaag
accctgactcagatgtactcacacttcctggcttttcaggagaaagacatcagtctcagg
cttgagggaagaggaacacctgaccctgactggatgagaaagaacatcatgtccctggga
aaactggctttccaacaactggagaaaggcaacctgatcttctatgaggaagacctgaga
gagtgtggcataaacattggtcaggcatcagtgtactcaggagtgtgtactgagattttc
agtgaggaactgaccttatgccagggaaaggtgttctgctttgttcatctaagcattcag
gagtttatggctgccctgtatgtgtttctcacattcatcaacgacaatgtgaatctatta
gccaaacagcaatcatttcttagacattttccatttggaaattcaaccacaaccagcttc
tacaaagcagcagttgacaaggcattacagagtgagagtggacacctggacctgttcctc
cgattccttctgggcctctcactggagtccaatcagattctcctacgaggcttgctaact
cagagaataagtagatcacataccaacaaggaaacagtcaagtgcatcaaggagaagatc
aaggcgaatccttctccagagagatgcatcaatctgttccactgtcttaatgaactgcat
gaccattctctagtggaagagatccaaagctacctgagctcaggaagtctctctagggcc
aaactctcacctgcacagtggtcagctctggtctttgtgttgctgacttcagaagaggag
ctggatgagtttgagctgaagaaatactccaggtcagaggagggtcttctgagactgctg
ccggtcgtcaaagcctccagagcagccctactgaggcgatgcaaactcacagagagatgc
tgtgaagcgttggccgcagctctcagctcaaactcctcacaccagagagagctggacctg
agtgacaacgacctgcaggattcaggagtgaagctgctctctgctggactggcaagtcca
cagtgtaaactggaaacattaagcctgaggcgatgcaaactcacagagagatgctgtgaa
gcgttggcctcagctctcagctcaaactcctcacacctgagagagctggacctgagtgac
aacgacctgcaggattcaggagtgaagctgctctctgctggactggcaagtccacactgt
aaactagaggtagtaaggttgtcactttgtggtgtcacagaggaaggatgtgctttgcta
gcctcctctcttaattccaacccctcacacctgagagagctggacttgagctataatcac
ccaggagactcaggagtgaagctgctctctgctgtactggaagatccacactgtaaactg
gagaaacttagtgtggagtgctgtgctgagttcaggatcagaccaggaccacagagatat
gcctgtgagctcacactggatccaaacacagcacacaaagagctctcgctgtctgacgag
aacaggacggtgacgcgagggaaagagcagccgtttcctgatcacccagagagatttaac
tactggaggcaggtgctgtgtcgagagggtctggatgggcactgctattgggaggcagag
tgtagtgggagagctctgatgggagtagcttacagagggatcagcaggagaggagaggga
catgactgctggcttggacgaaacgctgtatcctggagtctgaactgctctaatgacagt
tacactgcctggcacaatgacaagagcactgccataaccatcccctctctctctaacaga
gtaggagtttatctggactggacggccggcactctgtccttctacagtgtctctagcaca
ctgacccacctgcacacgttccactccacgttcactgagcccctctatccagggtttagg
ctaggctgggtggactcatcagtgtccttgtgtcaggtagaatag
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