Coregonus clupeaformis (lake whitefish): 121586856
Help
Entry
121586856 CDS
T08357
Name
(RefSeq) homeobox-containing protein 1-like isoform X1
KO
K24885
homeobox-containing protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121586856
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
121586856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
Motif
Other DBs
NCBI-GeneID:
121586856
NCBI-ProteinID:
XP_045082387
LinkDB
All DBs
Position
17:61377918..61408637
Genome browser
AA seq
529 aa
AA seq
DB search
MRQWCLPAAAPRTEPMPTGRLSPPLSDVRMECCEVEPRYTIEQIDLLQRLRLSGMTKPQI
VQALGSLERLDPDHRPPYCNDTATANPTTNTTPTTASAPAPPSSSSSSSSSSSSLSLASA
TTQTPGLDGASLSPSNSYEASPPPQYPHGVGVQKSFSYDIMAEEDWDLEEKVEEYMRRDS
NLVKEEIKTFLNNRRISQAIVGQVTGISQSYISQWLLQQGLEMSDSKRRAFYRWYLLERN
NPGLRWSESQHGPAGLGTGLSGLGQGLGQNPGSGPARGGDRDRDVTGMVGNATTGATAAA
TAATTWGRQRELLMHLLPWYTAAAQQAQPGATLSMRSLVKEEPDWRTGVSPGERGGVVGG
PLRLRRGSRFTWRKECQSIMESFFMENQYPDEAKREEIANACNSVVQKPGCKLSEFERVT
ALKVYNWFANRRKEMKRRANIEAAILESHGIEVPSPSCQSNGEELEPQDFAEQVNQRFIE
QEEISSRKDLDLQDPSSLAAVEVLPPPSPAPQVLEQKADESKRETVDEE
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcgacagtggtgcctcccggctgcggccccgcgaaccgaaccgatgcccacagggcgc
ctctcacccccgctatcagatgtcaggatggagtgttgtgaggtggagccacgctacacc
atcgagcagatcgacctcctccagcgcctccgtctctcagggatgaccaagccacagatc
gtccaggccttggggtccctagagcgactagaccccgaccaccgccccccgtactgcaac
gacaccgccaccgccaaccccaccaccaacaccacccctaccacagcctccgccccagcc
ccaccctcctcctcttcctcctcctcctcctcctcttcctccctctccttggcatccgcc
acaacgcagacccccgggctggacggtgcctcgctgtcgcctagcaacagctacgaggcc
tctcccccgccgcagtacccgcatggggttggagttcagaagtcgtttagctatgacatc
atggcggaggaggactgggatctggaggagaaggtggaggagtacatgaggagggacagt
aacctggtgaaggaggagatcaaaactttcctcaacaaccgcaggatctcccaggccatc
gtgggacaggtcacaggtatcagtcagagttatatctcccagtggttgctgcagcagggc
ttggagatgagtgactccaaacgcagagccttctaccgctggtacctgctggagaggaac
aacccagggctgagatggagtgaaagccagcacggcccggcgggtctgggaacggggctc
agtggtctcggccaggggctgggccagaacccgggctctggacccgccaggggaggggac
agagacagagacgtcacagggatggtgggaaatgcgactacgggcgccacagccgcggcc
acggccgccaccacctggggcagacagagagagctgctgatgcaccttctcccatggtac
actgctgccgcacagcaggcccagccaggtgctaccctgtcgatgcgctcccttgtgaag
gaggagcctgattggaggacgggggtcagccccggggagaggggcggggtggtgggcggt
cctctgaggctgcggaggggaagcagattcacttggaggaaggagtgccagtcaatcatg
gagagtttctttatggagaaccagtaccctgatgaggcgaagagagaggagatcgctaac
gcctgcaattcagtcgtccagaaacctggatgcaagctgtctgagtttgagcgtgtcacg
gctctgaaggtgtacaactggttcgccaaccgccggaaagagatgaagagacgggctaat
atagaggcagccatcttggagagtcatggtatcgaggttcccagcccgagctgtcaatcc
aacggggaggagctggaaccacaggactttgcagagcaagtgaatcaacgattcatagag
caggaagagatctcttccaggaaggaccttgatctacaagacccctcctcattggctgcc
gtcgaggtccttccacctccaagccccgcccctcaggttctggaacagaaagctgacgaa
tcgaaaagggagacggtggacgaggagtga
DBGET
integrated database retrieval system
