Coregonus clupeaformis (lake whitefish): 121586938
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Entry
121586938 CDS
T08357
Name
(RefSeq) ATP-dependent translocase ABCB1 isoform X1
KO
K05660
ATP-binding cassette, subfamily B (MDR/TAP), member 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121586938
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cclu02000
]
121586938
Transporters [BR:
cclu02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
121586938
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
ABC_ATPase
AAA_22
AAA_21
RsgA_GTPase
Rad17
AAA_5
AAA_16
AAA_7
AAA_29
AAA_28
AAA_25
Zeta_toxin
ECH_2
Motif
Other DBs
NCBI-GeneID:
121586938
NCBI-ProteinID:
XP_041759937
LinkDB
All DBs
Position
17:69085600..69109238
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AA seq
1342 aa
AA seq
DB search
MGREDGGIPDSLPTIPEEAFEKSYPKLAIDEDKKPQERMTEGLPTVDTECKPKKGLGRKK
KEPAKAVGFFQLFRYATGCEVLLMIIGLLCAALHGIALPLMCVVFGQMTDSFVQSGQRLN
VTANLTVEEISALLNSTDGCIQIPGVDIEALMTRHAYYFIGIGCAVFLLGTFQVMLFLLT
ATKQTKRIREKYFHAILHQQMSWFDTHQIGVLNVRLTDDINTINEGLGDKICVFVQFFCT
FLSGFIIGFIFGWKLTLVILAVSPLLAGSAAVWSKILATLTSKELSAYAKAGAVAEEILV
AIRTVVAFNGQKKAVERYENNLEDAKNFGIKKAITTNVSMGFTQFVIFGTYALAFWYGTK
LSVDEPENYTIGKTITVFFSVMIGAFSLGQGAPNLEAIAKARGAAYEVYNTIDQPRPIDS
SSKEGHKPDCVKGDIEFKNIHFSYPSRKDVKILQGVNLTVPRGKTIALVGASGCGKSTTI
QLLQRFYDPDSGEITLDGRDIRTLNVKWLRENMGIVSQEPVLFGTTIAENIRYGREDATD
EDIERAVREANAYDFISKLPDKLNTMVGERGAQLSGGQKQRIAIARALVKNPKILLLDEA
TSALDTQSESVVQAALDKARAGRTTIVIAHRLSTIRTADVIAGFSNGEVVEQGTHRELMA
RKGVYYSLVMQQSQGKPEEDEENPVEEEDNPPKYEDLDDVLYDSSDMDELEVVNEEGIEN
GGFERNSISSGRVEMRPTKKKSKKSKKDKKKEEKPEEAPDVPFTRILALNKPEWPYLLVG
TLSSLVGGAVYPCVAIIFAKIIGVFAEVDPEVKRQRTMMFSLLFLLIGGVAFVTYFLKGY
MFGKSGELLTMRLRRQVFHAMMRQEIGWFDDNNNAVGVLTTRLATDASLVKGATGSRLGL
ATNTVCALTIAIVVAFIHSWQLTLLILACVPFLIGANIIQMRAMAGHASKDQGALELSGK
ISTETVENFKTVVGLTREDVFFHKFMDSLERPYKNGLVKAPIYGLTFAIAQAIPYMVNAA
IFRFGSWLIAHCHTEYENVFLVFSVIIFAAMNIGESASFAPDFAKAKAAAGRILGLLEKK
PEIDIYSEEGGKPKDFAGDIEFRGIHFAYPTRQNVRVLQGLNVSVGPGQTLALVGESGCG
KSTSIQLLERFYSPAEGQVLVDGLDTKSLNLLWLRSQLGLVSQEPILFDCSISENIQYGD
NSREVSQDEIEEAAKNANIHNFIMGLPEKYNTRVGDKGTQMSGGQKQRIAIARALVRQPK
VLLLDEATSALDTESEKIVQQALDAARQGRTCIVIAHRLSTIQNADQIAVIQYGQVTEQG
THADLMAKEGAYYALVNAQVTH
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggggagagaggatgggggcataccagactctctaccaaccatccctgaggaggcattt
gaaaaaagttaccccaagctggccatcgatgaggataagaagcctcaggagcggatgaca
gaggggctgccaactgttgacacggagtgcaagccaaagaagggcctgggaaggaagaaa
aaagaacctgcaaaagcagttggatttttccagttgttccgctacgccacgggttgtgag
gtgctcctaatgataatcggcctgctatgtgctgccctccacgggatagcgctgcccctt
atgtgtgtagtgtttggacagatgaccgacagctttgtacaaagtggacagcggctcaac
gttacagccaatttgactgtggaggagatcagtgctttattgaactcaactgacggatgt
attcaaattcctggagttgatatagaggctctaatgactcgacatgcctattacttcatc
gggatcggttgtgctgtgttcctgctggggacctttcaggtgatgttgttcttgctgaca
gccaccaaacagaccaaacggatccgggagaaatacttccatgccatcctccaccagcag
atgtcctggtttgatacacaccagataggagttctcaacgtcaggttaacagatgacatc
aacacaatcaacgaaggccttggagacaagatctgtgtgtttgtgcagttcttctgtacc
ttcttgtcagggttcatcattggtttcatcttcggctggaagctgacccttgtcatcctg
gccgtcagtcctctcctggcaggatcagctgccgtctggtccaaaatacttgccaccctg
accagtaaggagctgtctgcctatgccaaagcaggggcggtcgctgaagagatactagtg
gctatcaggacagttgtggctttcaatggacagaagaaagctgtggaaaggtatgaaaac
aacttggaggatgctaaaaactttggaataaagaaggccatcaccactaacgtgtccatg
ggcttcacccagttcgtcatatttgggacgtacgccttggctttctggtacgggaccaag
ctctctgtagacgagcctgaaaactacaccattggaaaaaccattacagttttcttctca
gtgatgattggggcgttctctttgggccagggtgctcctaacttggaagccatcgccaaa
gcccggggtgctgcctatgaagtctacaataccattgaccagccgcggcccatagacagc
agttcaaaggaaggtcacaaaccagactgtgtgaaaggagacattgaattcaagaacatc
cacttcagctacccctccaggaaagatgtcaaaattcttcaaggagtgaatctgacagtg
cctcgtgggaagaccatagctctggttggagccagtggatgtgggaagagcaccaccatt
cagctgctgcagcgtttttatgatccagactcaggagagattaccctggatggtcgggac
atccggaccctgaatgtgaagtggctgagggagaatatgggtatcgtcagtcaggaacct
gtgctattcggaacaaccatcgcagagaacatccgctacggcagagaggatgccacagat
gaggacatcgaacgggccgtgagagaggccaacgcatacgacttcatctccaagctcccc
gataagctgaacaccatggtgggggagcggggagcccagctcagtggaggacagaagcag
aggattgccatcgcccgggccctggtcaaaaacccaaagatcctcctgctggacgaggcc
acatccgccctggacacccagagtgagtcggtcgtccaggccgctctggataaggccagg
gcgggccgcaccacgatagtgatcgcccaccgcctgtccaccatcagaacagctgacgtg
atcgctggcttcagcaatggggaggtggtggagcagggaacacacagggaactcatggcc
aggaagggagtctactactctctggtcatgcagcagagtcaagggaagccagaggaagat
gaagagaaccctgtggaagaagaggacaaccctcctaaatatgaggatctggatgatgtc
ctgtatgactcatctgacatggatgagctggaagtggtaaacgaggaaggaatagaaaat
ggcggctttgaaaggaactcaatcagcagtggccgcgtggaaatgagaccgaccaagaag
aaatctaagaagtccaagaaagacaagaagaaggaagagaaaccagaggaagctccagac
gtccccttcaccagaatcctggccctgaacaagcctgagtggccgtacctgttggtagga
accctgtctagcctggtggggggagccgtttatccctgtgtcgccatcatcttcgccaaa
atcattggagtgtttgctgaggttgacccggaagtcaaacgacagagaactatgatgttt
tccctgcttttccttctcatcggaggagtagcttttgtcacctacttcctaaagggttac
atgtttggaaaatcaggggaacttcttaccatgaggctgaggaggcaggtattccatgcc
atgatgagacaggagattggatggtttgatgacaacaacaatgcagtgggagttctaacc
accagattggccacagatgcatctctggttaaaggggcgactgggtctaggttgggtctg
gccaccaacacagtgtgtgctctcaccatcgccatcgtggtggccttcatccacagctgg
cagctcaccctcctcatcctcgcctgtgtgccgttcctcatcggagccaacatcattcag
atgagggccatggcaggccacgcctccaaagaccagggtgccctggaactgtctgggaag
atatctactgagaccgttgaaaacttcaagacggttgttggattgacacgggaggacgtc
ttctttcacaagttcatggacagtctagaaagaccatacaagaacggtttggtgaaggca
cccatctacggactaacatttgccattgcccaagcaatcccttacatggtcaacgctgca
atcttccgttttgggtcctggcttattgctcactgtcacacagaatatgaaaatgttttc
cttgtgttttccgtgattatatttgctgccatgaacataggagagtctgcgtcttttgct
cctgactttgccaaggcgaaagcagcagcagggagaattcttggcttgttggagaagaaa
ccagagattgacatttacagtgaggagggagggaagccaaaggactttgccggggacatt
gagttccgagggatccactttgcatacccgacccgtcagaacgtaagggttctccagggg
ttgaacgtgtcagtggggcctggtcagaccctggcgctggtcggggagagtggctgtggg
aaaagcacctccatacaactactagagcgcttctatagccctgctgaaggacaagtgtta
gtggatgggttggatactaagagcctgaacctgttgtggctgaggtctcagctgggcctg
gtgtcacaggagcccatcctgttcgactgcagcatctcagagaacatccagtacggggac
aacagcagagaggtctcccaggacgagatagaggaggcagccaagaacgccaacatccac
aacttcatcatgggcctgccagagaaatacaacaccagggttggggacaaggggacccag
atgtctggaggtcagaaacagaggatagccatcgccagagccctggtcagacagcctaaa
gtactgctgctggatgaagccacttccgccctggacactgagagtgagaagattgtccag
caggccttagacgccgcccggcagggccgcacctgcatcgtgatcgcccaccgcctgtct
accatccagaacgcagaccaaatagcggtcattcagtatggtcaggtgacagaacagggt
acacatgctgacctcatggctaaagagggggcttactatgccctggtcaacgcacaggtc
acccactaa
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