Coregonus clupeaformis (lake whitefish): 121587322
Help
Entry
121587322 CDS
T08357
Name
(RefSeq) protocadherin-11 X-linked-like isoform X1
KO
K16498
protocadherin delta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121587322
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121587322
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121587322
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121587322
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121587322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
121587322
NCBI-ProteinID:
XP_041760166
LinkDB
All DBs
Position
29:complement(46052044..46377087)
Genome browser
AA seq
1272 aa
AA seq
DB search
MDLAGQANVLVVLLTCLVLLSWAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDLKLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFNEKRCFYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAYDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVTIA
DVNDNRPVFKDSEVEVNIPENAPMGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKRHF
AIDSTTGLITVKQPLDRESTPVHKLIVLASDGSSTPSRAAVIVNVTDINDNVPSIDTRYI
MNLVNGTVLLSENAPLNTKIALITVTDKDLDLNGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKMKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNGEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFAV
MARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSDAG
DNAVVTLSILNGKDNFVIDPRTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSTSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAMDNDTGMNAELQYSIIGGSP
RGLFAIDKTTGNITLQEKVVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSNAT
FIQEQLRKSLETPLDRNVGNSEVTPQVNGYVIVVIAIIAGTMTVILVIFVTALVRCRQTP
RHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVTIEESKSDDPSQEHING
TLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKHHV
IQELPLDNTFVVGCDSHSKCLSTSSDPYSVSECSCQGGFKTPGQIHTRQNQGQTPEKSFS
SDASTCPHKEACHLSKITSANTQRRVTFHLPDGSQESCSASGLGDQEPSSTGSTTQPLPL
GFPQEDYYQQTSPNSRTEGDGNSDPESTVVEVNLAKALAEASETCTQECLILGHSDSCWM
PPALVTQFQSPSNTGTLPTLPTLPSFGFQHQQSYPWARGAQEDGRQCHTLGRPAPKDHLA
KGMNRPQFYNTLERHCSSKSKESDPIKVIPLASFSSSSSGQQTPATGGSSAFLHEHQLEG
AGRGQSNTNQFV
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaggtcaggctaatgtgctggtggtgttgctcacctgcctggtcctgctg
tcctgggcccaagagaaagactacacggtgagggaggagcagcccgagaatgtccgcatc
gggaatctgcggaaggacttggaccttaaccttgaccctgacttaaagctgtcttcgcca
ctgcagttcaagcccgtctacaaaacgggcgatgtgcctttggtgagggtggaggccaac
actggggagatcttcaccacggctcaccgcatcgaccgcgagaagctctgctcgggagta
ttcaacgagaagcgctgcttctacgagatcgaggtagccgttctgcctgacgagatcttc
cgtctggtcaagatccggttcctgattgaggacgtcaatgacaacgctccactcttccag
tccaccgttataaacatctccatcccagagaacacagccatcaacacccggtaccccgtg
ccctctgcgtatgacccagatgtggggatcaatgggattcaacactatgaacttgtcaag
agtgtgagtgagtttggcctggacatcatcgagaccccagagggagacagatggcctcag
ctgatcgtccagcagagcctggaccgcgaacagaaggacaccttcgtcatgaaaatcaag
gtggaggacggaggaacccccccaaagtccagcacggccatcctccaggtcaccatcgcc
gacgtcaacgacaatcgaccggtcttcaaggacagcgaggtggaggtgaacatcccagag
aacgcccccatgggaacctccgtcacccagctccacgccacggacgcagacctcggctcc
aacgcccagatccacttctccttctccaaccagatttcctcgtccaccaagaggcatttt
gccatcgacagcaccaccgggctgatcaccgtcaagcagcccttagaccgggagtccacc
ccggtccacaaactcatcgtcctggccagcgacggcagctccaccccctccagagctgcg
gttatcgtcaacgtaacggacattaatgacaacgttccgtccatagacactcggtacata
atgaaccttgttaatggaacggttctgctgtcagagaacgctcctctcaacacaaaaata
gccctaattacagtgacggacaaggacctggatctgaacggcaaagtgacttgttacacc
gaccacgatgttcctttcaggttaaagccagtctttaatgaccagttcctgctggagact
gcggctcccctagattacgaaacaaccagggaatatgcaattaagatagtggcgtcggat
tctgggaagcctcctttgaacacttcagcgatggttttaattaaaatgaaggacgagaat
gacaacgctcccatcttccctcagcctgagattcagctgtccataccagagaacaatgat
ccgtccacgcagctcataaagatcagtgccacagatgcagacagcggacataatggtgag
attatttattctcttggccctgacgctcccgatgggtttaacatagatcggcggtcagga
atcctgtccgttggcaaacgcctggacagagagaagcaggagaagtattcgttcgctgtc
atggcgagggacaatgggtctacttcgctgcagagcaatgtcacagtgaggttgatagtg
caggacctcaacgacaacagcccagctttcacccatcctgagtataacttctacgtgcct
gagaatctgcctctatatgggacagtgggtctgatcaccgtcacagactctgacgcaggt
gacaacgccgtcgtaacgctgtccatcctgaacgggaaagacaatttcgttattgatccc
cggaccggtgtgatcaaacccaacatcacgtttgatagagagcagcagagctcttacact
tttatggtgaaggctgtagacggagggcaaccgcccagcacttcatacgccaaggtcacc
ataaacgtcgtggacgtcaatgacaatcgacccgtttttgttatcccctcgtccaattac
tcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagagtgttcgct
atggacaatgacactggcatgaatgctgagctgcagtacagcatcattggaggatcacca
agaggcctgtttgccatagacaaaacaactggtaatataactctgcaggagaaggtagtc
tcagccgatcagggtttacaccggctggtggtgaaagtcaaagacctgggccagccagag
tccttacacgctatcgccctcattcatctgttcattaacgagactgtttccaacgctacg
ttcatacaggagcagctacgtaagagcttggagactccattggaccgtaacgtgggaaac
agtgaggtcacaccccaagtcaacggatacgtgattgttgtcatcgctattatcgctggg
actatgacagtcatcttagtcatcttcgtgactgccttggtgcgctgccgccagacgccc
aggcataaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaaccaggag
aaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctcctcttg
aactttgtcaccatagaagaatccaagtctgatgatcccagccaggagcacattaatgga
accctggacctccccgtggagctagatgagcagaccatggggaaatacaactgggccact
actccgaccaccttcaaacctgacagtccagacttagccaagcattacaagtccgcctcc
ccacagccgaccttccaaatcaaaccagagaccccgatggcgcccaataaacatcacgtg
attcaggagctcccgctggacaacacgtttgtggtgggctgtgactcgcactccaagtgc
ctctccaccagctcggacccgtactctgtctcagagtgcagctgtcaggggggattcaag
actcctgggcaaatccacaccagacagaatcagggccagacaccggagaagtccttcagc
tcagacgcatccacgtgtccccataaggaggcctgtcatctcagcaagataacctcagcc
aacacccagcgtcgtgtgacgttccacctcccggacggttctcaggagagctgtagcgcc
agcggcctaggggaccaggagcccagcagcaccggcagcaccactcagcctctccccctc
ggcttcccccaggaagactactaccaacagacctcgcccaacagccgcaccgagggagac
ggcaactctgaccctgagtccacagtggtggaggtgaacctggccaaggccctggcggaa
gcctcggagacgtgcacccaggaatgtctgatcctgggccactccgacagctgctggatg
cccccggccctggtgacccagttccagtctccgtccaacaccggtaccctgcctaccctg
cctacgctgccctcctttggcttccagcaccagcagagttacccctgggccaggggagcc
caggaggacggacgtcagtgccataccctgggcaggcctgcgcccaaagaccatctggct
aaagggatgaaccggccgcagttctacaacactctggaaagacactgcagcagcaagagt
aaggaatctgaccccatcaaggtcatccctctggccagcttttcctcgtcttcgtcgggc
cagcagaccccggccaccgggggatcctctgccttcttacatgagcatcagctggaaggg
gctggaaggggacagagtaacaccaaccagtttgtctaa
DBGET
integrated database retrieval system
