Coregonus clupeaformis (lake whitefish): 121587341
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Entry
121587341 CDS
T08357
Symbol
lgi3
Name
(RefSeq) leucine-rich repeat LGI family member 3
KO
K19999
leucine-rich repeat LGI family member 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121587341 (lgi3)
Membrane trafficking [BR:
cclu04131
]
SNARE
SNARE associated proteins
Syntaxin-binding proteins
121587341 (lgi3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EPTP
LRR_8
LRR_5
LRR_4
LRRCT
LRR_1
LRR_9
LRR_14
LysM2_CERK1_LYK3_4_5
Motif
Other DBs
NCBI-GeneID:
121587341
NCBI-ProteinID:
XP_041760177
LinkDB
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Position
18:complement(45186367..45197865)
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AA seq
550 aa
AA seq
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MLIAGLKRVPGWLKLLASLCLLLCLVGETGAKRVPKIPRCPATCSCTKDSAFCVDTKAIP
KSFPPGIISLTMVNAAFTTIPEGAFSHLNLLQFLLLNSNTFTVVADDAFAGLSHLQYLFI
ENNDIHALSKHTFRGLKSLTHLSLSNNNLQLLPRELFKYLDILTDLDLRGNSFRCDCKIK
WLVDWMEKTNTSVPAIYCASPFEFQGRRIHDLTPRDFNCISADFAVYETFPFHSVSVESY
EFNDDQFVAFAQPDTGFCTLFVWDHVEMVFRMYHNITSRSAVYCKPVVINNTLYMVVAQL
FGGSHIYKWEEDPQRFVKIQDIDTTRVRKPNFVETFQLDDEWYFAVADSSKAGSTSIYRW
NSNGFYSHQSLHPWHRDTHVEFLDVEGKQRLILSSASQPPVVYQWNRSLRQFAFHSQITE
TADVQMVKHFWVRKVLYLCLTRFIGDSKILRWEGQRYVEIQTLPSRGSMAVYPFTVGPRQ
YLLLGSDFSFSRVYLWDDLTQRFQPFQELNMRAPRAFSLVSVDNKDILLAASFKGNTLAY
QHLIVDLSAK
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgctgattgccggattgaaaagggtcccgggatggctgaagctgttggccagcctatgt
ctgcttctttgccttgtgggggagaccggggccaagagggtccccaaaatcccccgctgt
cctgccacctgctcctgcaccaaagacagtgccttctgtgtggataccaaggctatcccc
aagagcttcccccctgggatcatctccctgacaatggtgaatgcagccttcactacaatc
ccagagggagccttctctcacctgaaccttttgcagtttcttctgttgaactccaatacc
ttcactgtggtggctgatgatgcctttgcaggtctgtcacacctgcagtacttatttata
gagaacaatgacatccacgccctgtcaaagcataccttcagagggcttaaatccttgact
cacctttctctgtcaaataataacctgcagctccttccacgagaactcttcaaatatctt
gatattctgacagacttagacctgcggggtaactcattccgctgtgactgtaaaatcaag
tggcttgtggactggatggagaagaccaacacctctgtcccggccatctactgtgccagc
ccatttgagttccaaggccgcagaatccatgatctcaccccacgagacttcaactgtatc
agtgcagactttgcagtttatgaaactttccctttccattctgtgtcagtggagtcctat
gaattcaacgacgatcagtttgtggccttcgcccagcctgatacagggttctgtacactg
tttgtatgggatcatgtggaaatggtcttccggatgtaccataatataacatctcgctcc
gctgtctactgcaagcctgtggtgataaataacactctttacatggttgtggctcaactt
tttggaggatcccacatctacaagtgggaagaggacccacagcgatttgtgaagatccag
gacattgacaccacacgtgtgaggaaacccaactttgttgagaccttccagctggatgat
gagtggtactttgcagtggcagacagttccaaggcaggctctacaagcatataccgctgg
aacagcaacggtttctactcccaccaatcccttcatccctggcatcgtgacacccatgtg
gagttcctagatgtggaggggaagcagcgtctcattctctccagtgcctcccagccccca
gtggtttaccagtggaaccgcagcctgcgccagtttgcctttcattcccaaatcactgag
actgccgatgtgcagatggtcaagcatttctgggtgcgcaaagttctctacctctgcctt
acacgcttcattggcgactccaagattctccgctgggaggggcagcgctatgttgagatt
cagaccctgccctcacgtggctccatggctgtgtatccattcactgtgggcccccgccag
tatctcctcctagggagtgatttctccttctctcgagtttacctgtgggacgaccttacc
cagcgcttccagcccttccaggagctcaacatgagagcaccccgggccttcagcttggtg
tcagtggacaacaaagacatcctgctggcagccagcttcaaaggcaacaccctggcctac
cagcacctaatagtggatctcagtgccaaatag
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