KEGG   Coregonus clupeaformis (lake whitefish): 121587375
Entry
121587375         CDS       T08357                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020  RNA polymerase
cclu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    121587375
  09124 Replication and repair
   03420 Nucleotide excision repair
    121587375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cclu03021]
    121587375
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121587375
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121587375
Transcription machinery [BR:cclu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     121587375
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121587375
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      121587375
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N
Other DBs
NCBI-GeneID: 121587375
NCBI-ProteinID: XP_041760203
LinkDB
Position
29:45723889..45728765
AA seq 172 aa
MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
PNSNPPCYKTTDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttttatcatatttccctggagcatgagatcctgctccaccctcggtactttggtccc
aacctcctgaacactgtgaaacagaagctcttcacagaagtggagggaacatgcacagga
aaatatggattcgtcattgcggtgaccaccattgacaacattggtgcaggtgtcatccaa
ccaggcaggggattcgtgctttaccctgtcaagtacaaggctattgtcttccgtccattc
aaaggcgaggtggtagatgccgtggttacccaggtcaacaaagttggtctgttcacagag
atcggccccatgtcttgtttcatctctcgtcattccattccctcagagatggagtttgac
cccaactcaaatcctccttgttataagacaaccgatgaggacattgtaatccaacaggat
gatgagattcggttgaagatcgtgggaacaagagtagataaaaacgacatttttgccatt
ggatccctcatggacgattacctgggtcttgtcagctga

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