Coregonus clupeaformis (lake whitefish): 121587376
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Entry
121587376 CDS
T08357
Symbol
fgd1
Name
(RefSeq) FYVE, RhoGEF and PH domain-containing protein 1
KO
K05720
FYVE, RhoGEF and PH domain containing 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121587376 (fgd1)
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Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
FYVE
SOS1_NGEF_PH
PH_11
FYVE_2
RHG20_PH
PH_alsin
C1_1
Motif
Other DBs
NCBI-GeneID:
121587376
NCBI-ProteinID:
XP_045062730
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All DBs
Position
24:5832567..5919979
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AA seq
1021 aa
AA seq
DB search
MTGFVFCCAMYMDKTSVLRGPSSSSPRLMTKSLSLEPGAHGACLGAHDDDSDTRTPRLSS
DPGPQTSGPLGLQPPRALLHPAGHGCNGGEDESGTPQEEVPSTALKTRPPLPGPKPQVPP
KPPHLLQSAGAARPRPRAPDKPLPLPPPCRPLPADPRGGGASQPPTLPRAEGSSSPTSCV
LSLIEKFEREQIIVVPDITGGGLCTPRVLETGPGGGTFSPPASELPLGCLLVAWPPGSSP
DLQELQDPPQRLAMLADVVLGETEVPEDDNDNELGALCSASDKRLSMESGYSASERLTDT
MEMRKQAGSESESRSEIPSDHLSHPQPQTDGKLANRDSGIDSISSPSHSEELCFAGDEDR
VIYPCSPALTLPRLSSSSSSGYAEGPGGEGASAEGGRDSEGDSDLEEGSGDETIELINPM
MDLQPLALPQTNRQDSTELSVQQRVFNIANELLHTEKAYVSRLHLLDQVFCSSLLEEARS
RSSFPLDVVMGIFSNICSIYCFHQQFLLPALEKRMEEWDLNPRIGDILQKLAPFLKMYGE
YVKNFDRAMELVNTWMERSSQFKAIVHHIQREDRCGNLTLQHHMLEPVQRIPRYELLLKD
YLHRLPDDHDDFKQAQKSLELIATAAEHSNTAIRKMERMRKLLKVYELLGGEEDIVNPTN
ELIKEGHILKLSAKNGTSQDRYLILFNDRLLYCVPKLRLIGQKFGVRARIDVDGMELKES
SSVNVPRTFLVSGKQRSLELQARTEEEKKDWIQAIQATIQRHEQTLATFHHLNCSLRDED
YTPPNSPNCSELGKRAPTPIREKEVTLCMKCQEPFNSITKRRHHCKACGQVVCGKCSEFR
ARLLYDNNRANRVCIDCYTTLVGVPPSPASLTCSINRRRSILEKQASVAAENSVLCSFLH
HMEKGAGRGWQKAWFVIPENEPLVLYIYGAPQDVKAQRSVPLIGFEVSLPDSCDRLERRF
AFKISQSHLTLYFSADGEELQRRWIEVLSRAGRGEELQAHGSITEALEEEGEETATSGEN
T
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgactggatttgtgttttgctgcgcgatgtacatggataaaaccagtgtgctccggggc
ccgtcctcctccagtcctcggctgatgactaagagcctatccctggagcctggtgctcac
ggtgcatgcctcggggcccacgacgacgactcagacacccggacccctcgcctcagctca
gaccccggcccccaaacctccgggcccctgggtctgcagccccccagggccctgctgcac
cccgctggacacggctgtaatggaggagaagatgagagtggaactcctcaagaagaagtg
ccctccaccgccctcaagacacgtcctcccttacctgggcctaaaccacaagtgccccca
aagcctcctcacctgctgcagagtgctggtgctgctaggccacgcccccgtgccccggac
aagcccctccctctgcctccaccctgtagacctctgcctgcagatcccagagggggagga
gccagccaacccccaacactcccccgcgctgagggaagctcctcccccacctcatgcgtg
ctctccctcatcgagaagtttgagagggagcagatcattgtggtgcctgatatcacggga
gggggtctctgcacccccagggtcctcgagacaggaccaggagggggcaccttctctccc
ccagcctcagagctccctctgggctgtctcctcgtggcctggccccctggttcctctcca
gacctccaggagctccaggacccacctcagcggctggctatgttggctgatgtggtgctg
ggggagacggaggtaccagaggatgacaatgataatgaactaggagcgttgtgctctgcc
tctgacaagcgcctgtccatggagtctggctacagcgcctcggagagactcacggatacc
atggagatgaggaagcaggcggggtcagaatcagagagccgatcagagatcccctccgac
cacttgtcccacccccagccgcagacggacggcaagctggccaatcgggactctggcatc
gacagcatcagctctccgtcccacagtgaggagctgtgtttcgccggcgacgaggaccgc
gtaatctacccctgtagtcccgccctcacactgccacgcctctctagctcctcctcctcc
ggttatgccgagggtccggggggagagggggcatcggctgagggggggagggattcggag
ggggacagtgacttggaggaggggagtggggacgagaccattgaactcatcaaccccatg
atggatctgcagccattggccctgcctcaaacaaacagacaggactctacagagctgtcg
gtgcagcagcgtgtgttcaacatagccaatgagctcctccacacagagaaggcctacgtg
tctcggctgcacctcctggaccaggtgttctgctcctccctcctagaggaggcgcgctcc
cgctcctccttccctctggacgtggtcatgggtatcttctccaacatctgttctatatac
tgtttccaccagcagttcctgctccccgccctggagaaacgcatggaggagtgggatttg
aacccgcgcatcggggacatcctgcagaagctagcccccttcctgaagatgtacggggag
tacgtgaagaactttgaccgggccatggagctggttaacacctggatggagaggtcgtcc
cagttcaaagccatcgtccaccacatccagagagaggatcgctgtggtaacctgacctta
cagcatcacatgttggagccggttcagaggatccctcgctacgagctgctgctgaaagat
tacctgcaccgcctacctgacgaccatgatgactttaaacaagcacagaaatctctggag
ttgatcgccacggctgcagagcactccaacacagccatcagaaagatggagcgtatgcgg
aagctactgaaggtgtatgagttgctgggaggagaggaggacattgttaaccctactaac
gaactcattaaggagggacacatcctcaaactgtcggccaagaacggcacctcgcaggac
agatacctcatactgttcaatgatagattattgtactgcgtccctaaactgaggctgatt
ggtcagaagtttggggtgagagcaaggatcgacgtggatgggatggagctgaaggagagt
agcagcgttaacgtccccagaaccttcctggtgtccggaaaacaacgatcactagaacta
caggccaggactgaagaagagaagaaggactggatccaggctatccaggccaccattcag
agacatgaacagacgctagccacgttccaccatctcaactgctctctccgagatgaggac
tacactcctcccaactcacctaattgttccgagctggggaagcgtgcccccactccgatc
cgtgagaaggaggtgactttgtgtatgaagtgccaggagccgttcaactccatcaccaag
agacgtcaccactgcaaagcctgtggacaagtggtgtgtggaaagtgttcagagttcagg
gcccgtctgctctatgacaacaacagggctaacagggtgtgtatcgactgctataccacc
ctagtgggggttcccccctcccccgccagcctgacctgcagcataaacagacgacggtca
atactggagaaacaggcgtcggtagcagcagagaacagtgtgttgtgtagcttccttcac
cacatggagaagggagcaggcagaggctggcagaaagcctggtttgtcatcccagagaac
gaaccactggtgctgtacatatacggtgctcctcaggatgtgaaagcccagcgctctgta
cccttgattggctttgaggtctcccttcctgattcatgtgaccgcctggaacgccgcttt
gccttcaaaatcagccaatcacaccttactctctacttcagtgccgatggggaggagcta
cagcgccgctggatagaggtcctatcacgcgcagggagaggggaggagctacaggctcac
ggttcaattacagaggccctagaggaggaaggggaggagactgcaacctcgggagagaat
acatga
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