Coregonus clupeaformis (lake whitefish): 121587449
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Entry
121587449 CDS
T08357
Symbol
tra2b
Name
(RefSeq) transformer-2 protein homolog beta isoform X1
KO
K12897
transformer-2 protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121587449 (tra2b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121587449 (tra2b)
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121587449 (tra2b)
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121587449 (tra2b)
Spliceosome [BR:
cclu03041
]
Common components
Common spliceosomal components
SR proteins
121587449 (tra2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
GRP
Motif
Other DBs
NCBI-GeneID:
121587449
NCBI-ProteinID:
XP_041760279
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All DBs
Position
16:367041..372126
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AA seq
305 aa
AA seq
DB search
MSDNGKDFGERDSRSASRSVSPRGSGKSASRSPAHSPARSKDGSRHSRSKSHSRSRSKSR
SRSHRSSRRHYSRSRSRSHRRRSRSRSRSGEYRRRRSHSHSPMSNRRRHIGNRANPDPNC
CLGVFGLSLYTTERDLRDVFSKYGPLADVSIVYDQQSRRSRGFAFVYFEVREDANEAKER
ANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGGGGGSSSGGGGGGGGGGSGGPSSS
SSRRSSRDCDRGGDRGYDRGYDRGYDRYEDRECYRSYRRRSPSPYYSRGAYRSRSRSRSY
SPRHY
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaacgggaaggattttggcgagcgggactcgcggtccgcttccaggagtgtg
agcccaaggggttctgggaagtctgccagccgctctccggcccattccccagcccgctcc
aaagatggctccagacactcccggtctaagtcccactcccgatcccgctccaagtccagg
tctcgttcccacagaagctcccgcaggcattattcccgctctcgctcccgttcccaccgc
cgtcgttcccgtagccgttcccgaagcggagaataccgccgccgtcggagccacagccac
tcccccatgtccaaccgccgcaggcacattggcaaccgggccaacccggaccctaactgc
tgcctgggtgtgtttggtctgagcctgtacaccacagagagagacctgagagatgtgttc
tccaagtacggccccctggctgatgtcagcatcgtctacgaccagcagtcacgacgctcc
cgcggcttcgccttcgtctacttcgaagtccgagaggacgccaatgaggctaaggagaga
gctaatggaatggagttggatggacggaggatcagggtggatttctccatcaccaaacga
ccacacactcctacccctgggatatacatgggacggcccacatatggcggtggtggcggc
agcagcagcggaggcggtggtggtggtggtggaggaggaagtggcggccccagctcaagc
tcatctcgccgtagctcgagggattgcgaccgcggcggtgaccgtggttacgacagaggc
tacgaccgcggctacgatcgctatgaagaccgagagtgctacaggtcctacagacgcagg
tctccgtccccgtactacagccgaggggcctaccggtctcgctcacggtcgcgatcttac
tccccacgccactactga
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