Coregonus clupeaformis (lake whitefish): 121587507
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Entry
121587507 CDS
T08357
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121587507
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121587507
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
CUE
ERCC3_RAD25_C
HHH_3
T2SSK
Motif
Other DBs
NCBI-GeneID:
121587507
NCBI-ProteinID:
XP_041760434
LinkDB
All DBs
Position
18:complement(9019598..9037038)
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AA seq
1070 aa
AA seq
DB search
MSIFNLDRFRFDKNKPTSNQDKYSGSVSPESEKENKPAQETTTPPVSNQEKPGRGVVFED
VISDSDDLASDSRSDKLTKRVMEPVKKSVKGEVREMTETSDKEDKMNKELEERLAKLQEI
FPQRDRKELLEVIKSTSTLDGAVASCLMFGEKVSMRKRKQDGSSSSQDSDVIQQPSKKRR
PSLTEDSEEEAEPSWERREAMVRKLQRKFPDQDKEELRSVLQEHEWKVDDALEVLRMFSD
PDEDSSASEVRSSPEVKQKEPKAKSNAKPSKAKSDAKPSRDRRVSKDSKEEAKRSNASAL
KWMFKKPAPESRPDSSSSSWTSTSQKLSNGTSVAKKEASERKVRASYERASSSEDEDGEG
ASSEFEGEDDELDFVAEDEGTSTLKGQILLFFQEASLDELSLIAGCSLKKAQKIVERRPF
AVWQDLKEVFHKENGLSAELLLGCRVVLRERAVVQGLMSKCQTISGKMVKGVTQVIDKGM
GSVTQPSVLNRKLQLKPYQLIGLKWLLLLHQHKLSGILADEMGLGKTIQAIAFLARLYQD
GIDGPHLITVPSSTLDNWVRELKLWCPSLKVLVYYGSVEDRRYLRHDILSNQVDFNVIVS
TCSGLKFPPGTDLGSASPPPILTLTIGWGNAKLAPDQRLGATSPYNLAAVGYNLTIGNDS
DRSLFRKLKLKYAVFDEGHMLKNMNSLRYRHLMAINAEHRLLLTGTPLQNNLLELMSLLN
FIMPSMFSSSTTQIAKMFSMKSHEEQSHFERDRIAQAKLIMKPFILRRVKCEVLKQLPAK
EEKLEFCTMSEKQQQLYQNMVVKLKKSAIGEKKELCNVMMQLRKMANHPLLHRQYYTTER
LKAMSHLMLKEPTHFDADPVLIQEDMAAMSDFELHRLCQQYSSLHKYQLDKDLLLDSGKF
HLLQTLLATLKTKGDRVVLFSQFTMMLDIVEILLKHLGHRYVRLDGSTPIADRIVLIDDY
NMDPEIFVFLLSTRAGGLGINLTSANVVIMHDIDCNPYNDKQAEDRCHRLGQTRTVQVIK
LIHKDTIEGGMLQLGQKKLKLEQDMTAAEEGDEGTMPEDMAALLKASLGL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgagtatatttaatttagaccggtttcgttttgacaagaataaaccgacatcaaaccag
gacaaatacagcggttccgtaagtccagagtcggaaaaggagaataaaccagcccaagaa
acaacaacaccacctgtatccaaccaagaaaaacctgggcgaggagtagtatttgaagat
gtcatcagtgactctgacgatttggcaagtgactcgaggagtgataaattaacaaaaagg
gtgatggaacctgtcaagaaatcagtgaagggagaggtaagagagatgactgagacatct
gataaggaagacaaaatgaacaaggagctggaagagagactggccaaactgcaggaaatc
ttccctcaaagagacaggaaggagctgctggaggtgattaaaagcacaagcactttggat
ggtgccgtagcctcatgcctgatgtttggtgagaaagtctcaatgcgaaagaggaaacag
gatggatccagcagttcccaagacagcgacgtgattcagcagcccagtaagaagaggaga
ccgtctctgactgaagactctgaggaggaagcagagcccagctgggagaggcgggaggcc
atggtcaggaaactgcagaggaagttccccgaccaggataaggaggaactccggtctgtg
ctccaggaacatgagtggaaagtggatgacgccctggaggtgctgcgcatgttctcggac
ccagatgaagactccagtgcctctgaagtacgcagctcccctgaagtcaagcaaaaggaa
ccgaaagccaagagcaatgccaaaccaagcaaagcaaagagtgatgccaagccgagcaga
gaccgtcgggtgtctaaggatagcaaggaggaggccaagcgaagcaatgcttccgctctg
aaatggatgttcaagaaacctgcacctgaatctagacctgactcctcgtcctcctcttgg
acttctaccagccagaagctctctaacgggaccagcgtggctaagaaggaggcgtcggag
aggaaggtgcgcgcctcctacgaaagggccagcagctcggaggacgaggacggggagggg
gccagcagcgagtttgagggcgaggacgacgagttggattttgtggcggaggacgagggc
acatccacgctcaaaggccagatcctgctcttcttccaggaggcctcgctggatgagctg
tccctcatcgccggctgctcgttgaagaaggcccagaagattgtggagcgacggcccttt
gctgtttggcaggacctgaaggaggtgttccacaaagagaacggcctgtctgcagagctg
ctcctgggctgcagggtggtgctcagagagagagccgtggtccagggcctcatgtccaag
tgccagaccatctcgggcaagatggtaaagggagtcacccaggtcatagacaagggcatg
ggctccgtgacccagccctcggttctcaacagaaagttgcagttgaaaccctaccagctg
attgggctgaagtggcttctcctgctgcaccaacacaagctgagtggaatcctggctgac
gagatgggtttgggaaagaccatccaggccatagccttcctggccagactgtaccaggac
ggcatcgacggcccccacctcatcactgtgccctcctccacccttgataactgggttcgt
gagctaaagctgtggtgccctagtctcaaggtgttagtctattacggctccgtggaggac
cggcggtacctgcgacatgacatcctcagcaatcaggtggacttcaacgtcatcgtgtcc
acctgctccgggttgaagtttccaccaggtacagatctaggatcagcttcccctccccca
atcctaaccttaaccattgggtgggggaatgcaaaactggccccagatcagcgccttggg
gcaacttcaccctacaaccttgcagctgtgggctacaatctgaccatcggcaacgacagc
gaccgcagtctcttccgcaagctcaagctcaagtacgccgtgttcgacgagggccacatg
ttgaagaacatgaactccctccgctaccgccacctcatggccatcaatgctgagcaccgg
ctgctcctgaccggcacccctctgcagaataacctgctggagctgatgtcgctgctcaac
tttatcatgccctccatgttctccagtagcaccacgcagatagccaagatgttctccatg
aaatcccacgaggaacagagtcattttgagagggaccgcatcgcccaggctaaactcatc
atgaaacctttcatcctcagacgagttaagtgcgaggttcttaagcagctgccagctaag
gaggagaagctggaattctgcaccatgagcgagaagcagcagcaactttaccagaacatg
gtggtcaagctcaagaagtctgccatcggagagaagaaagagctatgcaacgtgatgatg
cagttgaggaagatggccaaccaccctctgctccaccggcagtactacaccacagagcga
ctcaaggccatgagtcacctcatgctcaaggagccgacccattttgacgcggacccggtg
ctgatccaggaggacatggcggcgatgtcggactttgagcttcaccggctgtgccagcag
tactcgtccctgcacaaataccagctggacaaagacctactgctggactctgggaagttc
cacctgctccagacgctactggccacactcaagaccaagggagaccgggtggtactcttc
agtcagttcaccatgatgctggacattgtggagattctgctcaaacacctgggccaccgc
tatgtcagactggatggctccacacccatagcagacaggatcgtgctgattgacgactac
aacatggacccggaaatctttgtgttcctgctgtcgacgcgggcgggcggcctaggcatc
aacctgacctcggccaacgtggtcatcatgcacgacatcgattgcaacccctacaacgac
aagcaggcagaggaccgctgccacagattgggccagactaggactgtccaggtgatcaag
ctgatacataaagacaccatagagggtggcatgctgcagctgggccagaagaagctcaaa
ctggagcaggacatgaccgctgccgaggagggtgatgagggcaccatgcctgaggacatg
gccgccctcctcaaggcatcgctgggcctgtga
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integrated database retrieval system
