Coregonus clupeaformis (lake whitefish): 123481003
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Entry
123481003 CDS
T08357
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123481003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
123481003
03036 Chromosome and associated proteins [BR:
cclu03036
]
123481003
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123481003
Coactivators
SAGA/TFTC/STAGA complex
123481003
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123481003
STAGA complex
123481003
TFTC complex
123481003
SAGA complex
123481003
SLIK complex
123481003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_HPS5
RMC1_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR19_1st
Tricorn_2nd
Beta-prop_VPS8
PEP5_VPS11_N
WD40_like
PROPPIN
WD_LRWD1
Beta-prop_ELP1_1st
Nbas_N
Motif
Other DBs
NCBI-GeneID:
123481003
NCBI-ProteinID:
XP_045073652
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MMMELQRKVMKRVRTEQIQYTVSQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTES
GCANIVSAAPCQADPQQYETQFSRLCNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSL
KGAVDGFYSRFHSLFLGDAEQRSTVEQLRNVLSQQDVTTNPKLLAFLDHKYVVHLTEPAY
SYLLRYLQSEDNSTLCRALSTHVQVEVTSSPRTDYQLYGTTGAGPAGAGAAATAPNSTSS
WSGVDGPEGGEAAVVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLL
NAAEVSADSKLLAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGS
GSEIKTLRGHSGPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVD
VSPCSLYFASGSHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVR
LWSTQQGASVRLFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTD
SVTSLSFSPDSSLVASSSMDNSVRVWDIRNSHGATHADGSSSELVGLYTGNTSKVLNVQF
MACNLLLVTGTAQEKHGQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgatgatggagttgcaacgaaaggttatgaagcgggtacgcacggagcagatccagtac
actgtatctcagtacctgaagcgaaggcagtatgtggacactgaaagttccctgaagggg
gctaaactgtcccagtccgcagaggagatggctgccaacctcacagtgcagacagagtcg
gggtgtgcaaacattgtctctgctgccccttgtcaagctgacccacaacagtacgagaca
caattttccagactatgcaattttctctcagaagcggcgttgccatggggccaggaagtg
agctgcgtcctgtacccgctcttcgtttacctccacctggacatggtgcgctgcagcctg
aagggggcagtggacggcttctacagccgcttccacagcctcttcctaggggacgccgag
cagcgctccaccgtggagcagcttcgcaacgtcctcagccagcaggatgtcaccaccaac
cccaagctcctggccttcctcgaccacaagtacgtggtgcacctgacggagccggcctac
agttacttgttacgatacctgcagagcgaagacaacagtaccctctgcagggccctcagc
acccacgtccaagtagaggtcacctcctcgccacgcaccgactaccagctctatgggacg
acgggtgctggacctgccggggccggggccgcagccacggcccccaactctacctcctcg
tggtcaggcgtggatggccctgagggaggggaggcggcggtggtggaggtccccacgggg
atcccgcagagcgaggcggccctggaggcgctgcaggactgcattaagaaggtgcgcgag
gggccgccgtcactcaccaccgtgtgcttctacgccttccagcacacggagcagctgctg
aacgcagcggaggtgtcggccgacagcaagctgctggccgccgggttcgacagctcggct
gtcaagctgtggagccttagggccaggaaactgaaggccaggccacaccgggccgacgtg
tcgcacatccgcctggcctgcgacgtgctggaagaggaggcagatgaagaggacggctcg
ggcagcgagatcaagacgctgcgcggccacagcggcccagtgttccgcacggccttcctg
acagacagctcgggcctgctgtcctgctcggaggacacgtccattcgctactgggacctg
ggcagcttcaccaacacggccctctaccagggccatgcctaccccgtctgggacgtggac
gtcagcccctgcagcctctacttcgccagtggctcgcacgaccgcaccgcccgcctctgg
actttctccaggacctaccccctgaggctctacgccggccacctagcggatgtggactgc
gtcaagttccaccccaactcaaactacctggccacaggctccacggataaaaccgtccgc
ctctggagtacccagcagggggcgtcagtgcgcctgttcacaggccaccgcggccccgtg
ttatccgtagccttcgcgcccaatgggaagtacctggcgtctgcgggcgaggaccagcgg
gtgaagctgtgggacctggcctcaggtgctctggtcaaggacctgaggggccacacggac
agtgtcaccagcctgtcgttcagccccgacagcagcctggtggcctcctcctccatggac
aattcagtcagggtgtgggacatccgaaactcccatggggcgacccacgcggatggctca
tccagcgagctggtggggctctacacgggcaacaccagcaaagttctcaacgtccagttc
atggcctgtaacttgctcctggtgacgggaacagcgcaggagaaacatggacagtag
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