KEGG   Coregonus clupeaformis (lake whitefish): 123481345
Entry
123481345         CDS       T08357                                 
Name
(RefSeq) integrin beta-3-like
  KO
K06493  integrin beta 3
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03266  Virion - Herpesvirus
cclu04081  Hormone signaling
cclu04145  Phagosome
cclu04148  Efferocytosis
cclu04510  Focal adhesion
cclu04512  ECM-receptor interaction
cclu04810  Regulation of actin cytoskeleton
cclu04820  Cytoskeleton in muscle cells
cclu05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03266 Virion - Herpesvirus
    123481345
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04081 Hormone signaling
    123481345
   04512 ECM-receptor interaction
    123481345
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    123481345
   04148 Efferocytosis
    123481345
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    123481345
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    123481345
   04810 Regulation of actin cytoskeleton
    123481345
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    123481345
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:cclu04131]
    123481345
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    123481345
   04515 Cell adhesion molecules [BR:cclu04515]
    123481345
   04090 CD molecules [BR:cclu04090]
    123481345
Membrane trafficking [BR:cclu04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    123481345
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   123481345
Cell adhesion molecules [BR:cclu04515]
 Integrins
  Integrin beta subunits
   123481345
CD molecules [BR:cclu04090]
 Proteins
  123481345
SSDB
Motif
Pfam: Integrin_beta Integrin_b_cyt Integrin_B_tail EGF_integrin PSI_integrin I-EGF_1 EGF_2 EGF_TEN EGF_Teneurin
Other DBs
NCBI-GeneID: 123481345
NCBI-ProteinID: XP_045065285
LinkDB
Position
30:complement(51682885..51704702)
AA seq 787 aa
MGTFFDRLWILSALLLASSEVLGSNICTSRGVSNCRQCLAIHPSCAWCFKEEFGQGGSSA
SRCDLKQNLLDGGCTKGELEFPSSTISVQEDTPLSDKASGAADDVTQIRPQKLSLTLRPD
DARRFTVTVKQVADYPVDLYYLMDLSFSMKDDLARLRSLGNQLAAAMGRTTSNLRMGFGA
FVDKPLSPYMYTYPEEAIRNPCYGIQTRCLPQFGYKHVLSLTKQVERFTEEVAKQQVSRN
RDSPEGGFDAVIQAVVCKDKVGWRADASHLLVFTTDATTHIALDGRLAGLVQPNDGQCHI
DKDNNYDKSSALDYPSLALITEKMSENNINLIFAVTNNVVSLYQNYSQLIPGTTVGTLSD
DSGNVIQLILDAYERIRSKVELELLGVPEELALSFNATCLNGELIQGLKSCSGLKIGDTV
SFSVEASLRGCPKEKNRTFTIKPVGFKDALEVMVHFACGCDCEAAAQPESPLCNQGNGTY
ECGVCQCHPGRLGDRCECADGDYRPSDQGNCSPKAEDPICSGRGNCVCGQCSCHTSGFGK
VWGKYCECDDFNCLRFKGEICSGHGKCDCGFCKCGSDWMGENCNCSTRTDTCMSSMGLLC
SGRGQCVCGACECTQPGAYGATCERCPTCPDACSIKKECVECKHFKRGRLFEEKSCARIC
RDEIHKVEELVFYEKNAVNCTYKDENDCVERFQYYEDASGKSILYVMEPDCPKGPDILVV
LMAVAGAILFLGLAGLLIWKLLVTVHDRREFAKFEEERAKAKWDTANNPLYKGATTTFTN
VTYRGNS
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgggaactttttttgaccgactatggatattgtctgctttattattagcttcttctgaa
gttcttggctcaaacatctgcacatctcgaggggtgagcaactgcagacagtgtttggct
atccaccctagctgtgcttggtgctttaaggaagagtttggccaagggggctccagtgcg
tcccgttgtgatctgaagcagaacctgttggatggtgggtgtacgaaaggggagctagag
ttcccctccagtaccatcagtgtacaggaagacacgcccctcagtgacaaggcatcgggg
gcggctgacgacgtcacccagatcagaccccagaaactcagcctcactctgagaccagat
gatgccaggcgtttcacagtgacagtgaagcaggtggcggactacccagtggacctatac
tatctgatggacctctccttctccatgaaggacgacttggcccgcctgcgctcccttggc
aaccagctggctgcagccatgggccgcaccaccagcaacctgcgtatgggctttggggcc
tttgtggacaagcccctgtccccatatatgtacacctaccctgaggaagccatcaggaac
ccttgctatgggatccagacgcggtgcctgcctcagtttggctacaagcacgttctgtct
ctgacgaagcaggtggagcgcttcactgaagaggtggcgaagcagcaggtgtctcgtaac
agagactccccagagggaggctttgacgcggtcatacaggcagtggtgtgcaaggacaag
gtaggctggcgtgcggatgcctcccacctgttggtgttcactactgatgctacgacacac
atagccctggacggccgactggctggtctagtgcagcccaatgatggacagtgtcacatc
gacaaagacaacaactatgacaagtcctcagccctggactacccctctctggctctgatt
acagagaagatgtctgagaacaacatcaacctaattttcgctgtgaccaacaatgtggtg
tccctctaccagaactacagccagctcattcctggcaccacagttggaacgctgtcggat
gactctgggaatgtgatccaactcatcctggatgcttacgagagaatccgttccaaggtg
gagctggagctgctgggtgttccagaggagctggccctgtccttcaacgccacctgcctc
aacggagagctcatccagggactcaagtcctgctccggacttaagatcggagacacagtg
tcgttcagtgtggaggccagtttacgcggctgccctaaggagaagaaccgtactttcacc
attaaacctgtgggcttcaaggacgccctggaggttatggtccacttcgcctgtgggtgt
gactgtgaggccgcagctcagcccgagagccctctctgtaaccagggcaacgggacctac
gagtgtggtgtgtgccagtgtcacccggggcgcctgggagaccgctgtgagtgtgctgac
ggggactacaggccctcagaccagggcaactgcagccccaaagctgaggaccccatctgc
agtgggaggggcaactgtgtgtgtggccagtgctcctgccacactagtggctttggaaag
gtgtggggcaagtactgcgagtgtgatgacttcaactgcctgcggttcaaaggagagatc
tgctcaggccatggtaaatgtgactgtggcttctgcaagtgtggctctgattggatgggg
gagaactgtaactgttccacccggacagacacctgcatgtccagcatgggcctgttgtgc
agtggccggggccagtgtgtgtgtggggcctgtgagtgcacccagccaggggcctacggg
gccacttgtgagaggtgtccaacctgccctgatgcctgcagcatcaagaaggaatgtgtt
gaatgtaagcacttcaagagaggccgtctctttgaggagaaaagctgtgcccgaatctgc
agggatgaaattcacaaggtggaagaactagtcttctatgagaagaatgctgtgaactgc
acctataaggatgagaatgactgtgtggagcgcttccagtactatgaggatgccagcggc
aagtccatcctgtatgtcatggagcctgactgccccaaaggacctgatatcctggtggtt
ctcatggcggtggcgggggccatcttgtttctgggtctggctggcctgctcatctggaag
ctgctggtcaccgtccacgaccgccgagagttcgccaagtttgaggaggagagggctaag
gccaagtgggacacggctaacaaccccttgtacaaaggagccactaccactttcaccaat
gtgacctatcgtgggaactcttga

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