Coregonus clupeaformis (lake whitefish): 123481345
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Entry
123481345 CDS
T08357
Name
(RefSeq) integrin beta-3-like
KO
K06493
integrin beta 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03266
Virion - Herpesvirus
cclu04081
Hormone signaling
cclu04145
Phagosome
cclu04148
Efferocytosis
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
cclu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
123481345
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
123481345
04512 ECM-receptor interaction
123481345
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
123481345
04148 Efferocytosis
123481345
09144 Cellular community - eukaryotes
04510 Focal adhesion
123481345
09142 Cell motility
04820 Cytoskeleton in muscle cells
123481345
04810 Regulation of actin cytoskeleton
123481345
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
123481345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
123481345
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
123481345
04515 Cell adhesion molecules [BR:
cclu04515
]
123481345
04090 CD molecules [BR:
cclu04090
]
123481345
Membrane trafficking [BR:
cclu04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
123481345
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123481345
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin beta subunits
123481345
CD molecules [BR:
cclu04090
]
Proteins
123481345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_TEN
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
123481345
NCBI-ProteinID:
XP_045065285
LinkDB
All DBs
Position
30:complement(51682885..51704702)
Genome browser
AA seq
787 aa
AA seq
DB search
MGTFFDRLWILSALLLASSEVLGSNICTSRGVSNCRQCLAIHPSCAWCFKEEFGQGGSSA
SRCDLKQNLLDGGCTKGELEFPSSTISVQEDTPLSDKASGAADDVTQIRPQKLSLTLRPD
DARRFTVTVKQVADYPVDLYYLMDLSFSMKDDLARLRSLGNQLAAAMGRTTSNLRMGFGA
FVDKPLSPYMYTYPEEAIRNPCYGIQTRCLPQFGYKHVLSLTKQVERFTEEVAKQQVSRN
RDSPEGGFDAVIQAVVCKDKVGWRADASHLLVFTTDATTHIALDGRLAGLVQPNDGQCHI
DKDNNYDKSSALDYPSLALITEKMSENNINLIFAVTNNVVSLYQNYSQLIPGTTVGTLSD
DSGNVIQLILDAYERIRSKVELELLGVPEELALSFNATCLNGELIQGLKSCSGLKIGDTV
SFSVEASLRGCPKEKNRTFTIKPVGFKDALEVMVHFACGCDCEAAAQPESPLCNQGNGTY
ECGVCQCHPGRLGDRCECADGDYRPSDQGNCSPKAEDPICSGRGNCVCGQCSCHTSGFGK
VWGKYCECDDFNCLRFKGEICSGHGKCDCGFCKCGSDWMGENCNCSTRTDTCMSSMGLLC
SGRGQCVCGACECTQPGAYGATCERCPTCPDACSIKKECVECKHFKRGRLFEEKSCARIC
RDEIHKVEELVFYEKNAVNCTYKDENDCVERFQYYEDASGKSILYVMEPDCPKGPDILVV
LMAVAGAILFLGLAGLLIWKLLVTVHDRREFAKFEEERAKAKWDTANNPLYKGATTTFTN
VTYRGNS
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgggaactttttttgaccgactatggatattgtctgctttattattagcttcttctgaa
gttcttggctcaaacatctgcacatctcgaggggtgagcaactgcagacagtgtttggct
atccaccctagctgtgcttggtgctttaaggaagagtttggccaagggggctccagtgcg
tcccgttgtgatctgaagcagaacctgttggatggtgggtgtacgaaaggggagctagag
ttcccctccagtaccatcagtgtacaggaagacacgcccctcagtgacaaggcatcgggg
gcggctgacgacgtcacccagatcagaccccagaaactcagcctcactctgagaccagat
gatgccaggcgtttcacagtgacagtgaagcaggtggcggactacccagtggacctatac
tatctgatggacctctccttctccatgaaggacgacttggcccgcctgcgctcccttggc
aaccagctggctgcagccatgggccgcaccaccagcaacctgcgtatgggctttggggcc
tttgtggacaagcccctgtccccatatatgtacacctaccctgaggaagccatcaggaac
ccttgctatgggatccagacgcggtgcctgcctcagtttggctacaagcacgttctgtct
ctgacgaagcaggtggagcgcttcactgaagaggtggcgaagcagcaggtgtctcgtaac
agagactccccagagggaggctttgacgcggtcatacaggcagtggtgtgcaaggacaag
gtaggctggcgtgcggatgcctcccacctgttggtgttcactactgatgctacgacacac
atagccctggacggccgactggctggtctagtgcagcccaatgatggacagtgtcacatc
gacaaagacaacaactatgacaagtcctcagccctggactacccctctctggctctgatt
acagagaagatgtctgagaacaacatcaacctaattttcgctgtgaccaacaatgtggtg
tccctctaccagaactacagccagctcattcctggcaccacagttggaacgctgtcggat
gactctgggaatgtgatccaactcatcctggatgcttacgagagaatccgttccaaggtg
gagctggagctgctgggtgttccagaggagctggccctgtccttcaacgccacctgcctc
aacggagagctcatccagggactcaagtcctgctccggacttaagatcggagacacagtg
tcgttcagtgtggaggccagtttacgcggctgccctaaggagaagaaccgtactttcacc
attaaacctgtgggcttcaaggacgccctggaggttatggtccacttcgcctgtgggtgt
gactgtgaggccgcagctcagcccgagagccctctctgtaaccagggcaacgggacctac
gagtgtggtgtgtgccagtgtcacccggggcgcctgggagaccgctgtgagtgtgctgac
ggggactacaggccctcagaccagggcaactgcagccccaaagctgaggaccccatctgc
agtgggaggggcaactgtgtgtgtggccagtgctcctgccacactagtggctttggaaag
gtgtggggcaagtactgcgagtgtgatgacttcaactgcctgcggttcaaaggagagatc
tgctcaggccatggtaaatgtgactgtggcttctgcaagtgtggctctgattggatgggg
gagaactgtaactgttccacccggacagacacctgcatgtccagcatgggcctgttgtgc
agtggccggggccagtgtgtgtgtggggcctgtgagtgcacccagccaggggcctacggg
gccacttgtgagaggtgtccaacctgccctgatgcctgcagcatcaagaaggaatgtgtt
gaatgtaagcacttcaagagaggccgtctctttgaggagaaaagctgtgcccgaatctgc
agggatgaaattcacaaggtggaagaactagtcttctatgagaagaatgctgtgaactgc
acctataaggatgagaatgactgtgtggagcgcttccagtactatgaggatgccagcggc
aagtccatcctgtatgtcatggagcctgactgccccaaaggacctgatatcctggtggtt
ctcatggcggtggcgggggccatcttgtttctgggtctggctggcctgctcatctggaag
ctgctggtcaccgtccacgaccgccgagagttcgccaagtttgaggaggagagggctaag
gccaagtgggacacggctaacaaccccttgtacaaaggagccactaccactttcaccaat
gtgacctatcgtgggaactcttga
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