Coregonus clupeaformis (lake whitefish): 123482272
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Entry
123482272 CDS
T08357
Name
(RefSeq) P43 5S RNA-binding protein-like isoform X1
KO
K09191
general transcription factor IIIA
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
123482272
03021 Transcription machinery [BR:
cclu03021
]
123482272
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
123482272
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIA
123482272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
TFIIIA_zf-C2H2
Zap1_zf1
zf-met
zf-C2H2_6
zf-C2H2_8
Ogr_Delta
Ta0938
zf-C2H2_jaz
Phage_zn_bind_2
Motif
Other DBs
NCBI-GeneID:
123482272
NCBI-ProteinID:
XP_045065292
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All DBs
Position
30:complement(52036796..52040914)
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AA seq
384 aa
AA seq
DB search
MNGVPHKQDSGHRQQLFNCNHADCRATFTREWRLKEHETVHTGAQPFQCKVADCGRVFSR
NSHLRRHALGHTGVKKFRCTFVSCTKTFFNADKLKRHVHYAHGEKDTYFKCNFPHCSLTF
KKRRVYKLHLKEHGISSNFKCSKRGCGVTFDTHVARKAHEKKHAGYRCSQPECNHFEQTW
GKMHKHMAKHPATFTCKLCQKVFKHVDSLRRHKRTHALQKPVLLCPSSGCKAYFSTTFNL
QHHIRKTHLQLLKYHCYFPDCPRTFAMRESLSRHLAHHDPEASPEKQKRKRNKKAWQKRL
EGHHQLPLVEDDLRRLFALRMRVSRRAKVEANLSGLFNERKIPHFVDSEVNLRDLFSIKP
PHSPRPAEQGPMEVTQPEVTVIKG
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaacggggtaccccacaaacaggactcgggtcatcgacaacagctcttcaactgcaac
catgctgattgtagggcaacgttcacacgagagtggcgtttgaaagagcacgagaccgtg
cacactggagcgcaaccttttcaatgtaaagtggctgattgtggccgtgttttctcacgg
aattctcacctgcgccgacacgcacttggccacaccggggtgaaaaaattcagatgtacc
tttgtgagttgcacaaagactttcttcaacgcggacaagttgaagcgacacgtccattat
gcccacggagaaaaggacacgtactttaagtgcaatttcccacattgctcattgacattc
aagaaacggagggtgtataaattacatttgaaggagcatggaatatcttctaatttcaaa
tgttcaaagagaggatgtggagtcacgtttgacacccatgttgctcgcaaagcccatgag
aagaaacatgcagggtaccgctgctcacagcctgaatgcaatcattttgagcaaacctgg
gggaaaatgcacaagcacatggctaaacacccggccacattcacctgtaagctgtgccag
aaggtgtttaagcatgtggactctctgcgtagacacaagcggacccatgccctgcagaag
cctgtcctgctgtgccccagcagcggctgcaaggcctacttctccactaccttcaacctg
cagcaccacatccgcaagacccacctgcagctcctcaagtaccattgttacttccctgac
tgccccaggacctttgccatgcgggagagcctgagccgacacctggctcaccacgaccca
gaggccagccctgagaagcagaagcgcaagcggaacaagaaggcctggcagaagcgtttg
gaaggccaccaccagctgcccttggtggaggatgacctgcggcgcctcttcgccttgcgc
atgagggtgtcacgacgggccaaggtggaggctaacctctctggcctcttcaacgagcgc
aagatcccccactttgtggactcggaagtcaacctgcgtgacctcttcagcatcaagccc
cctcactccccccgccctgcagagcaaggccctatggaggtcacccagccagaggtcact
gtgatcaagggttaa
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