Coregonus clupeaformis (lake whitefish): 123482789
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Entry
123482789 CDS
T08357
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123482789
03036 Chromosome and associated proteins [BR:
cclu03036
]
123482789
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123482789
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123482789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
M_domain
Ago_hook
UBA_7
UBA
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
123482789
NCBI-ProteinID:
XP_045067609
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All DBs
Position
38:4589633..4603687
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AA seq
1134 aa
AA seq
DB search
MCLSAAWNTPNLNTDRQNSHHTKQPLSPIHGLPGWGGQSPTESSQLNGDAGSSVWGNGDT
KTSADSSKNSGWDSAPSGGTSGWGCSGSGGGGSGGGEGGWGGDWGKPSSGGGEAKGGWDS
SDGPAQDQQVSSWGQPTPAPPSEGSGSGGSEGRSHRRERTGSEDGGPPPLPRQDLDPRVL
CNTGWGQTPVRQHTSWEMEEQRAANERKTSEMKGGGGGDTWRGSNSPSSGSQPDPRNGGA
NPNLGPSQRPGSGGSGGKSEGPSGWGGPPPSGWGEQPVNKAPNGSVGGWGEPMAQGPNTT
NNGPKSGGQSWGVPEEKSSPTWDDGPAKTQQNQSQSWGEGPKSSCQGWGSGHGSGSHGSN
GSNGSNGGEWREPDEVKKNGSSSSMWEGEGGNGRRRRRVEGQPQRRWRKWGRLGVEACPC
CWGGGWGETQHPNGPAPGWGSKPQESPNGPAPGWGSKPQESPNSPAPGWGSKPQESPNGP
APGWGSKPQESPNGPAPGWGSKPQESPNGPAPGWGSKPLESPNGPSPGWGSKPQESPNGN
SVGGGPGGGSMGSWGGPASVRQSSNPGWGPGSSGAKPDPAMEPTGWEEPSPPSIRRKMEI
DDGTSTWGDPSSYNKTVNMWDRNNPTGGNGNQGNNPTQPPTSKGNGGMAVNSNNNHSSVP
PSNNNHHHHHGQPPPHSQHHGNNNGSPNTAAPHHGGGPQGRPPMANPGWGELPSVQQPKP
EPAWGEPAGPSPAVDNGTSAWGKPPGVPGGWGDGGHGGHEPNGPYRRGNNGPSGPAPCKP
APKSMQDGWGGGREEEMGMSSGQWDADAGDMWNSPASQESSSSCNSWGHPLKKGPPKGKM
GNQPDEAWIMNRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGMS
DYNNGMNKPLGCRPQAFSKDPSSDRSPFLDKDGGLSDDAPPSPFMPSPVSLKLPLVNNLQ
PGQGLGSPGLNMQNLNNRQMQSGMFGSSGAALSRAMQQPPPQPSVPPLGSSQPSLRAQVP
QFLTPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQMMQA
QRNVSGPIRQQEQQVRGPCFNPYTFSSLCVALWTDPDPVQPPFPPRSRHHSSAR
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctttcagcagcatggaacaccccgaaccttaacactgacagacaaaacagccac
cacactaagcagcccctcagccccatccacgggctgcccggctggggaggccagtcccct
accgagtcctcccagctcaacggagatgcagggagctccgtctggggcaacggagacacc
aagacatccgctgactcctccaagaactcaggctgggactcggcaccctccggaggcacg
tccggctggggctgctctggcagtggaggcggcgggagtggaggtggagaaggaggctgg
ggaggagactgggggaagccatccagcggtggaggagaggccaaaggaggctgggattcc
tcagatggcccagcccaggaccagcaggtgagctcctggggccagccaaccccggccccg
cctagtgagggtagcgggagcggcggcagcgaggggcgctcccaccgcagggagaggact
ggcagcgaggacggaggcccccctcccctgccccggcaggacctggatccccgcgtgctc
tgcaacacaggctggggccagacgcccgtccgccagcacacctcctgggagatggaggag
cagcgcgccgccaacgagaggaagaccagcgagatgaagggaggcggtggaggggacacc
tggaggggctccaacagcccctcttccggatcccaaccggatccccgcaacgggggagcc
aaccccaacctgggaccatctcagaggccaggttcagggggctctggaggcaagagcgag
ggcccatcaggctggggaggccctccaccctcaggctggggggagcagcctgtcaacaag
gcccccaatggttccgtcggtggctggggggagcccatggcccaaggccccaacaccaca
aacaatggccccaagagtggaggtcaatcctggggtgtccctgaggagaagtcctcccct
acctgggacgacgggccagccaagacccagcagaaccagtcccagagctggggagagggg
ccaaagtcctcctgccaaggctggggctccggccacggaagtggcagccatggctccaat
gggtccaacggctccaatggaggagagtggagagaaccggacgaggtgaagaagaatgga
tcctccagcagcatgtgggaaggagaaggaggaaatggacggaggaggaggagggtggaa
ggacagccccagaggaggtggaggaaatgggggcggctgggcgtcgaagcctgcccctgc
tgttggggtggtggctggggggagacccagcaccccaatggcccagcaccaggatggggc
tccaagccccaggaaagccccaacggcccagcaccaggatggggctccaaaccccaggaa
agccccaacagcccagcaccaggatggggctccaagccccaagaaagccccaacggccca
gcaccaggatggggctccaaaccccaggaaagccccaacggcccagcacctggatggggc
tccaaaccccaggaaagccccaacggcccagcaccaggatggggctccaagcccctggaa
agccccaatggtccatccccaggatggggctccaagcctcaagaaagccccaacggcaac
agtgttggaggtggaccaggaggaggcagcatggggtcctggggcggccctgcatctgtg
aggcagagttccaaccccggctggggcccggggagctccggagccaaacccgacccagcg
atggagcccaccggctgggaggaaccctctcctccctccatccgccgcaagatggagata
gatgacggcacgtccacctggggagaccccagctcttacaacaagaccgtgaacatgtgg
gaccggaacaaccccactggcggtaacggtaaccaaggcaacaaccccacccagccgccg
accagtaagggcaacggaggcatggccgtcaacagcaacaacaaccactcctccgtcccc
cctagcaacaacaatcaccatcaccaccacggacagcccccgccacacagccagcaccat
ggcaacaacaatggatctcccaacaccgccgccccgcaccacggtggaggaccccagggc
agaccaccaatggccaacccaggctggggcgagctgcccagtgtccagcagcccaagcca
gagccggcgtggggggagcccgctggcccttctcctgcagtggacaacggcacctctgcc
tggggtaaaccccctggtgttcctggaggctggggcgatggggggcacggggggcacgag
cccaatggaccctacaggaggggcaacaacggaccctctggacctgcaccctgcaagcca
gcccccaaatctatgcaagatggctggggaggcgggagagaggaggagatgggcatgtct
tctggccaatgggatgctgacgctggcgacatgtggaacagccctgcctcccaggagagc
agctcttcctgtaattcgtggggccatccgctcaagaagggcccacccaagggcaagatg
ggcaaccagccagatgaagcctggatcatgaaccgtctcatcaagcagctcactgacatg
ggcttcccgagggatcctgccgaggaggctctgaagagcaataacatgaacctagaccag
gccatgagcgctctgttggagaagaagaccgaactggacaagcggggcatgggcatgtcg
gactacaacaacgggatgaacaagccgttgggttgccgtccccaggccttctccaaagac
ccctcctcggaccgcagcccattcctagacaaggatggtggtctgtcagacgacgccccc
ccctcaccgtttatgccttctcctgtcagcctgaagctccccctggttaacaacctgcag
cctgggcagggcctgggctccccggggctcaacatgcaaaacttgaacaacagacagatg
cagagtggaatgtttggcagtagcggagcagcactatcccgggccatgcagcagcctcct
cctcagccgtcagtgccgcctctcggctcctcccagcctagtctacgcgctcaagtgcct
cagtttctcacccctcaggttcaagcacagctcttgcagtttgccgcaaaaaacattggt
ctgaaccctgcacttttaacctcaccaataaaccctcaacaaatgaccctgttgtaccaa
cttcagcaactgcaaatggcgtaccagcgtttacaaatccaacagcaaatgatgcaagct
cagcgcaacgtctccggccccatcagacaacaagagcagcaagtaagaggcccctgtttc
aacccctatacattctcatcactatgtgtggccctctggacagacccagacccagtccag
cccccattccccccacgcagccgccaccactcctctgctcggtaa
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