Coregonus clupeaformis (lake whitefish): 123482967
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Entry
123482967 CDS
T08357
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
cclu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123482967
09122 Translation
03013 Nucleocytoplasmic transport
123482967
03015 mRNA surveillance pathway
123482967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123482967
03041 Spliceosome [BR:
cclu03041
]
123482967
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123482967
Spliceosome [BR:
cclu03041
]
Complex C
Other components
EJC/TREX
123482967
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
123482967
NCBI-ProteinID:
XP_045068148
LinkDB
All DBs
Position
Unknown
AA seq
1472 aa
AA seq
DB search
MADEDVTLDGKPLQSLRVADLKAALEHRHLPKSGAKNALVKRLKGALMLENVKRTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADAGETGPEEEEEEDEEE
EEHTEQGNDSASYHPDKHRPMPSQPPLTRAEEEGGGEGGPMMMGMMSQVMGKGMMTRRPH
FGPGSVPQESPDAPGGPGSWMQQRPSLRHEEPTTPSPPRAVASLSVRVLGDPERQGLPPS
MPPRAQAQEKEGTAPADDDRPAHYVLHLSRSAQAAAGAGGNRVQEDSDEDDDSSEEDEDE
WGPAAGARRGVGGGGRGGGRSPPPQPQEPSPSVPAGRERSRRKLQPPQHIPPQQVVHQPP
MQLRQPTPPPSPPPELSFPLPDTPKQSPPDMAEEPERAGAGVAVRSPPGGLQRQDSDSSS
RSSSPEPLAQRRPGPLSLLARKMASEGAFGKSGEGASDGHTGPGGESSGPGDGGSSIPGA
GPGVGVVMFPGAAITHTGGSSAAHSGSVPVAEVPAPVAMFGSGAQSHPLSLVSGAAVPSM
TLTAEPQGPSGETAQKRTEKEKKQVEKEKQEEKERESCLPPGKHRRDLMSLSASSQFGSG
GSEVPAVNQGDSPKKSPFGRDEPLSSPPGSTTCLPAVAPKKPRMFSDTSSGSMTSPPKPG
QEGSVVVTTPGGPPEPHGISVKPLKQGVLVSGAQQHTDNTIEVTSPNKASAEKPGGDDGK
MEKERDSQAEKGTAKAGETRRRGPEEAVEVEPMGPVLPPSYLGKREEEKKRKEDERKKEE
ERCRQRKRASNRRSSPTSSGDSSSDSGSSSSRSSGSNSSQDKKKKSGPGKGRQDEKRRLE
KGGEKKQSSREEKQSSLSEPSGPGPMEVVERTDPEDSRAPQPTPEGDPENSEGRMEESTT
LKALAARKISLTTGSKTSPEGAAAGEADSGTAAGRKRRWGSSTAVTAKKPSISITTDSLK
SLIPDIKPSQEAVVDLHPDDIQLSGDEDTSSTTREDQGLDKDLKIRRTVTQVVVPGESQE
NGQGGREEEEEEKRERDRERTHKEKRKDSYSEDTMECQSSTTQDADTKKVTPSDTLVRRS
ISQQKSGVSVTIDDPVRTDKQPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEE
GFWIDKIKSHCYVTYSSTEEAVATRAALHGVKWPQSNPKFLSVDFCEQNELDFHRGLLTV
DPREEHRPQPAVGPGGPKVRPGGLPPLMPERDGRGDRGAVGGVRDQWAEREREMERRERT
RAEREWDRDKVRDFGDKPGEVRERGRRSRSLDRERRRKERDGKERKTDKKEEPPAKLLDD
LFSKTKAAPCIYWLPLTEEQANEREKEREERQKERERRRKEQQEEEDKKREEERKERIKS
REEGGAAVSTGGGSVRGSEGDRDREGERGRDREGERGRDREGERGRDREGERGRDREGDK
RKDSGGFKPRGPDAKPLSGFRRSRSNLRDRRR
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgaagatgttacgctggatggtaaaccgctacaatccctacgtgtggcggat
ttgaaagccgctttggagcatcgacacctccctaaaagcggggcgaaaaatgcgctcgtt
aagcgactaaaaggggctctgatgttggagaatgttaagaggacctccacttcccacatt
gggctccagcccaactcccagattggggaggagatgagccagaacagctttataaagcag
tacctggcccagcagcaggagctcctccgccagaggctggagagagaggcccgggaggcg
gccgaggccgatgcaggggaaacaggccctgaggaggaggaggaggaggatgaggaggag
gaggagcacacagagcagggcaacgacagcgcttcctaccaccctgacaagcatcgcccc
atgccctcccagcccccactgacccgggcagaggaagagggaggaggtgaaggagggcca
atgatgatgggaatgatgtcccaggttatgggcaaagggatgatgactcgcagaccacac
tttggcccaggctccgtgccccaggagtcccctgacgcccctggaggtcctggatcctgg
atgcagcagcgtccctccctccgccacgaggagcccaccaccccctcccctccccgcgct
gtggcctccctgtctgtgcgtgtcctgggggaccccgagcgccagggcctgccaccctcc
atgcccccccgcgcccaggcccaggagaaggaaggcactgccccggcggatgacgaccga
cccgcccactatgtgctccacctcagccgctccgcccaggcagcagccggcgccgggggt
aaccgcgtccaggaagacagcgatgaagatgatgacagcagtgaggaggatgaagatgag
tggggacctgcagcgggggcaaggagaggggtcggtggcggaggaagaggaggaggacgt
tcccctcccccccagccccaggagccttcccccagcgtcccagcgggccgagagcggtcc
agacgcaagctccagcctccgcaacatatcccccctcagcaggtagtacaccaaccaccc
atgcagctccgccagcccaccccgcccccctctccacccccagagctctccttccccctc
cccgacacccccaagcagagcccgcccgacatggctgaggagccagaaagagcaggggct
ggggtggccgtccgctcccctccaggtggcctccagaggcaggactccgactccagctcc
cgctccagcagcccagagcccctggcccagcggcggcccggacccctctccctgctcgcc
cgcaagatggcttccgagggagcgttcggaaagagtggtgagggtgcctcagacggccac
acaggtcctggtggggagtcttccggaccaggagatggaggtagcagcatcccaggagca
ggaccgggggttggggtagtcatgttccctggggctgctatcacccacacaggaggcagc
agcgcagcgcactccggatccgtccctgtagctgaggtccctgcaccagtggctatgttt
ggatcaggagcccagtcccatcctctctctctggtgtctggagcagctgtccccagcatg
accctcaccgctgagccccagggtccatctggagagacggcacagaagaggacggagaaa
gagaagaagcaggtggagaaggagaaacaggaagagaaggagagggagagttgcctgccg
ccagggaagcacagacgtgatttgatgtctctgtctgcgtcctcacagtttgggtctggg
gggtcagaggtgcctgcggtgaaccagggggacagcccgaagaagtcacccttcggcagg
gacgaacccctctcctcccctcccggctcaaccacctgcctgcctgccgtcgcccccaag
aagccccgcatgttctccgacacctcatctggctccatgacgtcccctcccaaacctggg
caggaagggtctgtggtggtgaccaccccagggggaccccctgaaccccatggtatatct
gtgaaaccgctcaaacagggagtcctcgtctcaggggcccagcagcacacggacaacacc
atagaggtcacctcaccgaacaaggcgtccgcggaaaagcctggaggagacgatgggaag
atggagaaggagcgtgacagccaggcagaaaaggggacagcgaaagccggggagaccagg
agaaggggacctgaagaggctgttgaggttgagcccatggggcctgttctgcccccctct
tacctaggtaagagagaagaggagaagaagcggaaggaagatgagaggaagaaggaagaa
gagaggtgcaggcagaggaagagggcgagcaacaggaggtcatcccccaccagcagcggc
gactcttcctccgattctggatcctcttcatcacgttcctctggctccaactcctcccag
gacaaaaaaaagaagtctggccctggaaaaggaagacaggatgaaaagagaagactggaa
aagggaggagagaagaaacagtcttccagggaggagaagcagtcttccctgtcggagccg
tccggccctggccctatggaggtggtggagaggacagacccagaggactccagggccccc
cagcccacccccgaaggggacccagagaacagtgagggccgcatggaggagagcaccact
cttaaagctttggccgcacgcaagatctctttgaccacaggcagtaagacgtctccagag
ggagcagcagcaggagaggcagactcggggaccgccgctgggaggaagaggaggtgggga
tccagcacggccgtcaccgccaagaaaccatccatcagcatcaccacagactcactcaag
tctctgatcccagacatcaagcccagtcaggaggctgtggtggatctccacccagacgac
atccagctgtctggggacgaggacacctcctctaccaccagggaggaccagggcctggac
aaggacctcaagatcagacgcaccgtcacacaggtggtggtcccaggtgaaagccaggag
aatggccagggaggacgagaagaggaggaggaggagaaacgggagcgtgacagagagagg
acacacaaagagaagagaaaggacagctactcagaagacaccatggagtgtcagtcctct
acaacacaggacgccgacaccaagaaagtcactcccagtgatactctggtgcgtcgctcc
atcagtcagcagaagtctggtgtgtctgttaccatcgacgatcctgtccgcacagacaaa
cagccctcaccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtgcga
cctttcaccctgggccagctgaaagagctgctgaacaggacaggctctgtggtggaggag
ggcttctggatcgacaagatcaaatctcactgctacgtcacttactccagcacagaggag
gctgtggccacacgagctgctctccacggggtgaagtggccccagagcaaccctaaattc
ctcagtgtggacttctgtgagcagaatgagctggacttccacagaggtctgctgaccgtg
gaccccagagaggagcatcgcccccagcctgctgtgggtcctggaggtcccaaagtccgt
ccgggggggctgccccctctgatgcctgaacgggacgggcgtggggaccgcggggctgtc
ggaggggtgcgggaccagtgggcggagagagaaagggagatggaacgccgggagaggacc
agggcggaacgcgagtgggaccgggacaaggtccgagacttcggagacaaaccaggagag
gtgcgggagagagggaggagatctcgctccctggatagagagaggaggcggaaggagagg
gacgggaaggagaggaagactgacaaaaaggaagagcctcctgccaaactactagacgac
ctcttcagtaagaccaaagcagctccctgtatatactggcttcccctcactgaggaacag
gcaaacgagagggagaaggaacgggaagagcgacagaaagaacgagagaggaggcggaaa
gaacagcaggaggaggaggacaagaagcgagaggaggagaggaaggagagaataaaaagc
agagaggagggaggagctgcggtcagcactggaggtgggagtgtccggggatctgaggga
gaccgggacagagagggggagcgagggagggacagagagggggagcgagggagggacaga
gagggggagcgagggagggacagagagggggagcgagggagggacagagagggggataag
aggaaggacagtggtggattcaaacccagaggtcccgacgctaaacccttgtccgggttc
cgccgtagccgtagcaacctccgagacagacgccgctga
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