Coregonus clupeaformis (lake whitefish): 123483288
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Entry
123483288 CDS
T08357
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123483288
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
123483288
3'-5' decay
Other 3'-5' decay factors
123483288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
AAA_30
UvrD-helicase
ResIII
PAM2
AAA_22
zf_CCCH_4
AAA_16
PhoH
Mov-10_helical
zf-CCCH_4
AAA_7
AAA_5
TPR_1
Motif
Other DBs
NCBI-GeneID:
123483288
NCBI-ProteinID:
XP_045068886
LinkDB
All DBs
Position
Unknown
AA seq
2005 aa
AA seq
DB search
MADRRAEKSCEEASGSLARREYEAAVSHCTDALLAIGPPAPPSPGPSASNPPNNTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLQEVSGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAVRSEMATEYTEDNEEEVRDGWQFRPPPRGVTS
SEEYTLCKRFLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQDSKHFTENYME
ALIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIA
LLYDAHRPHFSITGVSVGDAGAQRLQAEAEGCQEWTAGEEALAANNGMDHCIYTVAVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIV
EFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQF
QLNRLPLCEMHYALDRIKDNGILFPDASLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILRQDDSRVLICTHSNSAADLYIKDYLHP
YVEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLS
TSQYLCQLDLEPGIFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSE
FSRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPS
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QMVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHE
NASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPTQHPHQHQHHHQHPHPQ
GHTASKQPGSHQQQQQQSPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFSPPLGG
TPGSMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDP
RIMSHQAAMAYNLNLLQAQNRGSPTPYGGVTHPSPLGMGQQTSPDKELQADSIRNGKMDG
CPKSEQSRLQTPERKTSEMKDKQGECDPGGGRVLDSQTDGLGFPNAMLHRKDNSSQRTLN
YHLAPPNPAFAPHPVGRAFPPQYPGVSRLPFRVPPQHPGGVPVMGQPNQHHSAQLSPAYA
SGSHNPSFFGGAMASHRGVLETEEEGPEEMGNSMRSQMGHQGGHHPALSQPSRVNSFGEE
IQEGGLGDGMDPLALEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQ
LLARANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDPRDPAEMQPPPQSRLLQYRQV
QSRSPGDPSSPSAATSNHTGPFPPGPYPGRDPTSHELELLNNPGLQQHPGNPLYNPNAYP
HQLGHSTTPPPQVKYLLQEAQWPHSGAGVTQNHMLAQGQGFPYGLPVMAHPSRQEQVHLM
QLHHQHQQHQQQQQQQQGQGPSQEPYHPLSPRTAGATALHNVEEYEPRGPGRPLYQRRIS
SSYPDEGSPANAAALAQQQPQPCPADPQEHPHTHQHQHPHPHQHPYGYPPPELWPGNGGG
PGPFQNIPCNGASTLVQHQHRDLLVASKALRQAAEEQMKAEAAVAAAQPPAHSLQHLGQF
PPLMPNSKQQQPQQQQAPPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRARPEQVKKHS
DPLSLLQELSIGSSNGSNGYYSYFK
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcagagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggcggcggtgagccactgcacagatgcgctgctggccatcggccccccggcc
cctcccagccctggaccctccgcatccaacccccccaacaacacggttacccccctccgc
agccgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgtcctggccgaggagctggccaagggagacgggtcatttcag
gccagcctgcgctgcatgctgctggacggcagcctgcaagaagtgtccggcctcctctcc
aagtccctgtttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccgttcgtagcgagatggccacagaatatacagaggac
aatgaagaagaagtgagggatggatggcagtttcgccccccgcctagaggagttaccagc
agtgaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgccgctacggtgcc
cagtgcacgtcggcccactcccaggaggagctgatggagtggcagaagcgctacgcctcg
cgcctcatccgcctcaagcagcagcaggacagcaaacacttcaccgagaactacatggag
gcgctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttg
gatggcgtcaacgtggaacacagctccaacctgtctgtaacggtcaccaccaagaaatca
gctcactcctggactttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgcc
ctgctctacgatgcccaccgaccccacttttccatcacgggcgtgtcggttggcgatgcc
ggtgcccagcggctgcaggcggaggcagagggctgccaggagtggacggcgggcgaggag
gcgctggcggccaacaacggcatggaccactgcatctacacggtggcggtgggcttcagc
accgagatcttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtg
ctgatgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctgatgcaa
gccaggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagaccatcgtg
gagttcagccccaatgagacggtggacctggaccgcagcctgctggcccgataccagatc
cccctgtcggccgaccagctcttcacccagtcggtgctggacaagaccctgacccgggac
aactaccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaa
gtcagcaagttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggc
atctcgggtggcgccaagtacgcccagaacgggcagctcttcgcccgcttcaagctgacg
gagacgctgtcggaggacacgctggcgggccgcctagtcatgaccaaggttaactcagtc
ttgctgctgcccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgg
gtctacgaggcctgcatcgaagagaagaccaaggactacatcttcctgcggatatgcaag
gactgctgcgaggagctggggttgatacctgatagggaactgcaggtggagttgcagttc
cagttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaat
ggcatcctgttcccagacgccagccttactcccaccatcccctggagccccaacaggcag
tgggacgagcagctggacccgcggctaaacgccaagcagaaggaggccatcctggccatc
accacgcctctcaccatccccctgccccctgtgctcatcatcgggccctacggcacgggc
aagaccttcaccctggcacaggccgtcaagcacatcctcaggcaggacgacagcagggtc
ctcatttgcacccattccaacagtgcggctgacctgtacataaaggactaccttcatcca
tatgtagaagctggcaacgcgcatgcaagacctctcagggtatacttcaggaaccgctgg
gtgaagactgtccacccgttggtgcagcagtactgtttgatctctaacacacagtacact
ttccagatgcccgagagggaggacatcctcaggcaccgcgtggtggtggtcaccctcagt
acctcccagtacctctgccagctggacctggagccagggatcttctctcatatcctattg
gacgaggcagcccaggccatggagtgtgagaccatcatgcctttcgcgcttgccagcaaa
agcacccgcattgtgctggctggggaccacatgcagctcagtccgtttgtgtacagcgag
ttttctcgagagcggaacctgcatgtgtcgctgttggaccggctgtacgagcactaccca
gccgagttcccctgccgcatcctgctctgtgaaaactaccgctcccacgaagctatcatc
agctacacgtcagagctgttctacgacgggaaactgatggccagcgggaagcagccgtct
cacaaggacttctacccactgaccttcttcacggctcgtggcgaggacgtccaggagaaa
aacagcacggcctactacaacaacgccgaggtgtttgagatcgtggagcgggtggaggag
atgcgtaagaagtggccggtggcgtggggcaagctggacgagggcagcatcggcgtggta
tcgccctacgccgaccaggtattccgcattcgcgccgagctccgaaagaagaggatgcac
gaggtcagcgtggagagggtgctcaacgtccaagggaagcagttccgggtgctcttcctg
agcactgtacgcacgcggcacacgtgcaagcacaaacagacggccatcaagcgcaaggag
cagatggtggaggactcgacggaggacctggactacggcttcctgtccaactacaagctg
ctcaacacggccatcactcgcgcccagtccctggtggccgtggtgggagaccccatagcg
ctctgctcggtgggccgctgcagaaagttctgggagaagttcatctccatctgccacgag
aacgccagcctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgag
ctcaagaagacatacgtgctcaacccgctggcgcccgagttcatcccccgcgccttgcgg
ccccagccgacccagcacccccatcaacatcaacatcatcaccaacacccacacccccag
ggacacacggccagcaagcagcccgggtcccatcagcaacagcagcagcagtctcccccg
aaggggaaagggcaacatgcaaaccacacagagcacttcccacctgaaggatttgttcaa
cccaaccctgcagtgttgatgggcaaccccatccgggcgttctcgccgcccctggggggc
acacctggcagcatgggcaagtcccccagtcccgtgcagaggatagacccccacacgggc
gccagcatcctctacgtgcccgccgtctacgggggcaacatggtcatgtccatgccactg
ccctctgtccccatccagttgccatggcccggctaccaaaaccgctttgccatggaccca
cgcatcatgagccaccaggcggccatggcctataacctgaacctgctgcaggcccagaac
cggggctcgcccaccccctacggcggagtcacacacccctcccccttgggcatgggccag
cagaccagtcctgacaaggagcttcaggctgattccatcagaaacggtaaaatggacggg
tgtccaaagtccgagcagagtcggctgcagacaccagagaggaagacctcggagatgaag
gacaaacagggagagtgtgatccgggcggtggccgggttctggactctcagacagacgga
ctgggtttccccaatgccatgctccaccgcaaggacaactcaagccaaagaaccctcaac
taccacttggcaccccccaacccggcctttgccccccaccccgtgggccgggccttcccc
ccacagtaccccggcgtgtccaggctcccctttagggtgccgccccagcacccaggcggg
gtcccggtcatgggccagcctaaccagcatcactcggcccagctctcccctgcctacgcc
agtggcagtcacaacccctccttctttggcggggccatggcctcccacaggggtgtgctg
gagactgaggaggaggggccagaggagatggggaactccatgaggtcccagatgggccac
cagggggggcaccacccggccctgtcacagcccagtcgggttaacagcttcggggaggag
atccaggaaggaggcctgggagacgggatggaccctctagctctggaggccctgagccag
caggcgcggctgggccagtggggtgagcccgggcccttcctccagggcggtgtggccttc
cctctgccccagcagctggcccatctggcccagcccggcctagcccgcttcccccctcag
ctgctggcacgggccaactggaggatgagtgccggcatggaggacgaggctggcggaccg
cctttcaccaggttcccaggcctcctgcgagagatgcccccccaggatcagcccgatccc
agggacccggctgagatgcagccccctccccagtcccgcctgctccagtatcgccaggtc
cagtcccgctccccgggcgacccatcctccccctcggccgcaacctccaaccacaccggc
cccttcccccctggcccctatcccggccgagaccccaccagccacgagctggagctcctc
aataacccgggtctccagcagcacccggggaacccgctctacaaccccaacgcctacccc
caccagctgggccactccaccaccccgcccccgcaggtcaagtacctcctccaggaggcc
cagtggcctcacagcggagctggcgtgacccagaaccacatgctagcccagggccagggc
ttcccctacgggctgcccgtcatggcccaccccagtagacaggagcaggtccacctcatg
cagctccaccaccagcaccagcagcaccaacaacaacagcagcagcagcagggtcaaggc
ccaagccaggagccctaccaccccctctcccccagaacagcaggtgccaccgcccttcac
aatgtagaagagtatgaacccaggggtcccgggcggcccctctaccagcggcggatctcc
tccagctacccagacgagggatcccccgccaacgccgccgccttggcccagcagcagcca
cagccttgcccggcagacccccaggagcacccccacacacaccaacaccaacaccctcac
ccccaccaacacccctacggctaccccccgcccgagctgtggcccggcaacgggggtggc
cccggcccgttccagaacattccatgcaacggagccagcacactcgttcaacaccaacac
cgggacctcctagtagcttccaaggccctgcggcaggcagcagaggagcagatgaaggct
gaagcagcagtagctgcggcccagcctcctgcccactccctccagcacctcggacagttc
ccccctctcatgcccaacagcaagcagcagcagccgcagcagcagcaggcccccccagag
cccggccagggcccggggggcccccaaaaccctggaaaaccccccaccatgtcctacgcc
agtgccctccgcgccccacccaaacccagagctcgccctgaacaggtcaaaaagcacagc
gacccactttccctactccaagagctcagcataggaagttcaaacggtagcaacggatac
tattcctattttaaatga
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integrated database retrieval system
