KEGG   Coregonus clupeaformis (lake whitefish): 123483517
Entry
123483517         CDS       T08357                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03020  RNA polymerase
cclu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123483517
  09124 Replication and repair
   03420 Nucleotide excision repair
    123483517
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cclu03021]
    123483517
   03400 DNA repair and recombination proteins [BR:cclu03400]
    123483517
Transcription machinery [BR:cclu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     123483517
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123483517
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4
Other DBs
NCBI-GeneID: 123483517
NCBI-ProteinID: XP_045069643
LinkDB
Position
5:complement(25053173..25056733)
AA seq 143 aa
MASSGGSTTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSE
VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLE
GRFEDEELQQILDDIQTKRSFQY
NT seq 432 nt   +upstreamnt  +downstreamnt
atggcgtccagtggcggttcaacaacaactgtcggagatattgaggaggacgcttctcag
ctacttttccccaaagagttcgagaacgcggagacacttctaaactctgaggtacacatg
cttctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatcggag
gtcttcatgaaaactctgaattatactgcacgtttcagccggttcaaaaacagagaaact
atcgcaagcgttcgcagcttgctcttgcagaagaagctgcataagtttgagctggccagt
ttggccaacctttgtccagaagcagcggaggaggccaaagccctcatccctagtctggag
gggcggttcgaggatgaagagctgcagcaaatccttgatgacattcagaccaagagaagt
ttccagtactaa

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