Coregonus clupeaformis (lake whitefish): 123484321
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Entry
123484321 CDS
T08357
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123484321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
123484321
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
123484321
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
Rrp44_S1
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
123484321
NCBI-ProteinID:
XP_045070459
LinkDB
All DBs
Position
Unknown
AA seq
953 aa
AA seq
DB search
MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECNQEESVLQKDACIESNLCSFP
HYLLPDTNVVLSQIDILEDPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKRFYTF
TNEHHRETYIEREQGESANDRNDRAIRVSTKWYSDHLKNTPTDEGLKVVLLTNDRGNKEK
AEESGLLTYRCEEYVKSLIANPELVDRLALTNDDKNEITSSRMLFPEHLPLSRIQSGIKS
GTFQQGTFRASRDNYLEAAVFVHREGDDSTEVLIQGLQNLNRAVHQDVVAVEILPLNQWV
APSSVVLQDEGPKEDDVTEEEEAELKRGLSGAESRKPTGRVVGIIKRNWRPFCGMLFLSQ
IKEATRHLFTPADRCIPRIRIETRQAATLAGQRIMVAIDGWPKHSRYPNGHFVRSLGSAG
DKETETEVLLLEHDVPHQDFSQAVLSFLPKMPWNITEEDMAVREDLRNLTVCSVDPPGCT
DIDDALHCRDLPNGNQEVGVHIADVSHFIRPGNTMDLEAANRGTTVYLTGRRIDMVPELL
SSNLCSLRSNVERLAFSCIWEINDKAEIVKTRFTKSVINSKVGGEPPLTYAEAQMRIDDT
NMNDDTTKSLRGLNRLAKILKKQRIEKGALTLSSPEVRFHIDSETHDPIDLQTKELKETN
SMVEEFMLLANISVAQKIYDEFSECALLRKHPAPPPSNYDILNKAAKSKDLVIHTDSAKA
LADSLDAAQVDGFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIR
RYSDIIVHRLLAVAIGADSTYPDLMDKHKQSALCNNLNYRHKMAQYAQRASVAFHTQLFF
KSRGILNEEGFILFVRKNAIIVLIPKFGLEGTVFFENKDKPSPKLIFNEEAPSLTVEGHS
FNMFDKVKVTISLDASNVQHQKIRMSLVEPVICGVSVAPSEPEPEAKRAKLDR
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatcaaaaactttcgtaaagaaaacccgatcaggcgggattatgaaaatagtg
cgtgagcactacctgcgagacgatatttggtgcggaagtgaagtttgtactgaatgcaat
caagaagagtctgtgttgcagaaagacgcttgcattgaaagcaacttgtgttctttcccc
cactatctgctcccagacacaaatgttgtgttgagccagattgatatcctggaggatccc
ttgatcaagaacgtgatcattctgcagactgtactccaagaggtccgccacaggagcgct
cccatctacaagcgattgaaagacatccttcatgacaaggaaaaacgcttttacactttc
actaacgaacatcacagagaaacgtatatagagagagagcagggggaaagcgccaacgat
cgtaatgacagagccatccgcgtatctacaaagtggtacagtgatcacctgaaaaacacc
cccacggacgaggggttaaaggttgttctgctgaccaatgaccggggcaacaaggagaaa
gcagaggagtccggcctgctcacatacagatgtgaggagtacgtcaagagtctgatagcc
aaccctgagctggtggatcgactggcgttgaccaacgatgacaagaatgagatcaccagc
agtaggatgttgttcccggagcacctgcccctgtctaggatccagtctgggattaagagt
ggaaccttccaacaggggacgttccgggctagcagagacaactacctggaggctgctgtg
ttcgtccacagagaaggagatgacagtacagaggttctgatccaaggcctacagaacttg
aacagggctgtccatcaggatgtggttgctgtggagatcctgcctctgaaccaatgggtg
gctccgtcctctgtggtgctgcaggacgaggggcccaaggaggatgatgtcacagaggag
gaggaggcagagttgaagaggggtctgtctggggcggagtcacggaaacccacaggcaga
gtggtgggcatcatcaagaggaactggagacccttctgtggcatgctcttcctgtcccaa
atcaaagaggcgacccgtcacctcttcaccccagctgaccgttgtatccccaggatccgc
atcgagacccgccaggcggccacgttggcaggacagaggatcatggtggctatcgacggc
tggcccaagcactccagataccccaatggtcattttgttcgtagcctgggcagtgcaggg
gacaaggagacagagacggaggtgctactgctggagcatgatgtcccacaccaggacttc
tcacaggccgtcctcagtttcctccccaagatgccctggaacatcacagaggaggacatg
gctgtgagagaggacctgaggaacctgacagtctgcagtgtggatcctcctggctgtact
gacatagatgatgctctgcactgtagagaccttcccaatgggaaccaagaggttggtgtc
cacattgctgatgtgagccacttcatacggccaggcaacaccatggacctggaagcagct
aacagagggactacagtctacctgactggaaggaggatcgacatggttcctgaactgctg
agctctaacctgtgttccctacggtccaatgtagagaggctggccttctcttgtatatgg
gagatcaacgacaaggctgagatagttaagaccagattcactaaaagtgtcatcaactcc
aaggtagggggagagcctcccctgacgtacgctgaggcccagatgaggattgatgacacc
aacatgaatgatgacaccaccaagagcttacgaggcctgaacagactagccaagatcctg
aagaaacagaggatagagaaaggtgcgttgactctctcctcgcccgaggttcgcttccac
atcgacagtgagactcacgaccccatagacctacagaccaaggagctcaaggagaccaac
tcgatggtggaggagttcatgttgctggccaacatctcagtagctcagaagatttatgat
gagttctcagagtgtgctcttctcaggaagcaccccgcccctcctccatctaactatgac
atcctcaacaaggctgccaagtctaaggacttggtgatccacacggactcggccaaggct
ctagctgactctctggacgcggcccaggtggacggcttcccttacttcaacacattgctg
cgtatcctagcaacacgatgcatgatgcaggctgtgtacttctgctccgggatggacagt
gacttccaccactatggactggcctctcccatctacacccacttcacatcacctatcaga
cgatactctgacatcatagtgcatcggctgctggctgtagccatcggagcagacagcacc
tacccagacctgatggacaaacacaagcagtctgccctctgcaacaacctcaactacaga
cacaagatggcccagtacgcacagagagcctctgtagccttccacacacagctgttcttc
aagagcagaggcatcctgaacgaggagggattcatcctgtttgtgaggaagaacgccatc
atcgtcctcatccctaagtttggtctggagggaacagtgttcttcgagaacaaagacaaa
cccagccccaaactgatcttcaacgaagaggctcctagtctgacggtggagggtcactcc
ttcaacatgtttgacaaggtcaaagtgaccatcagtctggacgcgtccaacgtccagcac
cagaagatcaggatgtccctggtcgaacctgtgatctgtggagtgagtgttgcgccgtct
gagcccgaaccagaggccaagagagctaaactggaccgctga
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