Coregonus clupeaformis (lake whitefish): 123484335
Help
Entry
123484335 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
123484335
04121 Ubiquitin system [BR:
cclu04121
]
123484335
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
123484335
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
123484335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
hAT-like_RNase-H
Motif
Other DBs
NCBI-GeneID:
123484335
NCBI-ProteinID:
XP_045070486
LinkDB
All DBs
Position
5:42611368..42613369
Genome browser
AA seq
615 aa
AA seq
DB search
MSDTRKRSSIWLQFKDIGNKKAECLHCKTKVTIRAGSTTNLHRHTRTVHPTVQLEERGQA
SSPSTDPGVSHTRTTAAVTSTAIPMRASITSPTATQSKISQFLPKLMTPAKQHSIDDELA
KMVASDFQPFSIVEDKGMKNFVKALNPTYTLPSRKTLSQTMIPKLYDTERALWQERVTKA
PSVCLTTDCWTSRTTCSFMSVTCHFIEDYKMTSCLLDCFEFTDRHTAENLAVELLRVAKE
WQVEDKVVCCVSDNAANITKAIKVLKWTHHPCLAHTLNLVVRDALKVIKTTVDKVKAVVE
FFHKSTVAAQKLKSTQRQMGIPELRPKQECATRWNSTFDMLKRMLEIKDAIISTLALINA
SIEPLSQEEWELVKEVCAVLQPFQEVTVEISADSYVTASKMLLLCKGLQLVTAENQWTVT
VQKVKELVAALCSAMDRKFLRMEYNTVLSETTLLDPRFKKLAFSDRRAVDEALQRISAAA
AAKCTPSSQPAPPLQGQVEEEQQTSAVWRLFDDRATGDASRRNPTADAIMEVRSYLEEPL
IQRAEDPLSWWQAKASVFPLLVKVMEGRLCIVATSVPSERIFSKTGQILTERRNRIRPIS
PSKLRHLIFLNANLP
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacactagaaagcgaagcagcatctggctgcagtttaaagatattgggaacaag
aaagcagagtgccttcactgcaaaacgaaggtcactataagagcaggttccaccacaaac
ctgcatagacatacaagaactgtccatcctacagtgcagttagaggagagagggcaagcc
agctcaccatctactgatcctggtgtgtctcataccagaacaacagctgctgtaacgtct
actgccatccccatgcgtgcaagtataacctctcctactgcaactcaaagcaaaataagt
cagtttttacctaaactgatgaccccagccaaacagcacagtattgatgatgagttggct
aaaatggtagcttctgattttcaacccttttccattgtggaggacaaaggaatgaaaaac
tttgtcaaagccctaaatcccacatacactctacccagtagaaaaacactttcccaaaca
atgatcccaaaactatatgacacagaacgtgcattatggcaagaaagggtgacaaaagct
ccatcagtttgcctgacaactgactgctggacctccagaacaacctgctctttcatgtct
gtcacttgccactttattgaagattacaagatgacatcttgccttctggactgcttcgag
ttcaccgacagacacactgcagaaaacttggcagtggagctactaagagtggcaaaagag
tggcaagtagaggacaaagtggtgtgctgtgtgagtgataatgctgcaaacatcaccaaa
gccataaaagttttgaagtggacccatcacccatgtctggcgcatacactaaacctggtg
gttagagatgctctgaaggtgatcaaaacaaccgtggataaggtgaaggctgttgtggag
tttttccacaaaagcacagtagcagcacagaagctaaagtccacacagcgccaaatgggg
attcctgaactgaggcccaaacaagagtgtgccaccaggtggaactcaacatttgatatg
ttgaaacgaatgcttgaaataaaagatgccatcatctccaccctggccctcatcaacgca
tctattgagccattaagccaagaggaatgggagctggtgaaagaggtctgcgccgtcctg
caaccattccaggaggtgactgtggagataagtgcagacagctatgtcacagcctcgaaa
atgctcctgctttgcaaaggtctgcagctggtgacagccgagaaccaatggacagtaact
gtgcagaaagtgaaggaattagttgcagctctttgttcagccatggaccgcaaatttctg
cggatggagtacaacactgtcctttcagaaactaccttattggatccaaggtttaaaaaa
cttgccttcagtgatcgtagagctgttgatgaagctcttcagaggattagtgcagcagca
gcagcaaaatgcacccccagcagccagccagctccaccattacagggccaagtggaggag
gagcagcaaacctctgctgtttggaggctttttgatgacagagctacaggagatgcttca
aggagaaatccgacagctgatgctataatggaggtgaggagctaccttgaggagcccctc
atccagagagcagaagacccactgagctggtggcaggccaaggcctcagtctttccactc
ctggtgaaggtgatggaggggagactatgtattgttgccacatcagttccttctgagaga
atcttctccaaaacagggcagatactcacggagaggcgaaatcgtatcaggcctatcagc
ccatccaagctgaggcatctgatcttcctgaatgccaacctgccctga
DBGET
integrated database retrieval system
