Coregonus clupeaformis (lake whitefish): 123484508
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Entry
123484508 CDS
T08357
Name
(RefSeq) integrin alpha-10-like
KO
K06586
integrin alpha 10
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123484508
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123484508
09142 Cell motility
04820 Cytoskeleton in muscle cells
123484508
04810 Regulation of actin cytoskeleton
123484508
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
123484508
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin alpha subunits
123484508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_1
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP_3
FG-GAP_2
ITGAX-like_Ig_3
vWA_SIBA-E
EIF3I
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
123484508
NCBI-ProteinID:
XP_045070872
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MELHKYLLLFKFIVLLKGLCECFNIDVKRPRIYTGPEEALFGFSVLQHDNEGEKSMLVGA
PWDGPSNTRRGDVYKCIVGEERNSNCTKTNLGESALQNVSRNLKNSHLGMTLSPDSPDGF
LACAPLWSQECGTSVFSTGICASVSDDLEPRETIAPTAQRCTTYMDIVMVLDGSNSIYPW
YEVQNFLSNILSKFHISPEQMQVGVLQYGEVAVHEWSLRDYQTTQEVVEAAKNISRQEGR
ETRTAYAIHMGCTEAFSPERGAREGATKVMIVVTDGESHDGEELPDALEECEKRNITRYA
IAVLGHYIRRQQDPETFISEIKYIASDPDDKYFFNVTDEAALNDIVDALGDRIFTLEGTL
GYNESSFELEMSQIGFSTHVLDDGILFGMVGAYDWDGGVLKEGTEGRIMPTREAFESEFP
QELKNHAAYLGYTVSSVIVGDWRRLYVAGAPRFKHKGKVILFELSNDGDVNIAQALNGEQ
IGSYYGSEVCGLDVDQDGITDVLLVAAPMYLGHGNKEAGRVYIYSLSGEEVFVSNGTLKA
EDRSQDARFGYALASVPDLNHDGYTDLLVGAPLEDGHIGAIYVYHGQGIHIIHNYKQRIA
GSSLSPSLQYFGRSVSARLDLDGDGLLDLAVGAQGSAVLLSSRSIVQINMSLSFQPHSIN
IIQKTCQRGGRESACLNATACFLALSHSPGTHSNSFELSVVAMLDDRKLTARALFDDSNQ
RQTQLGVRVHTGETVCHNLPFHVFDTADYIRPISFSLRFKINDTESGPVLDEGWPTTFKR
SIAFFKDCGEDDVCVTDLVLKAHMDISGTRQQPYVIRSPRRRLAVEVQLQNRLENAYNTS
LTLHYSRNLHFSSLSIREDAQLKIECTSLSSNSHSCNVSYPVFRSHSKVNFMLDFEFSCT
SLLSKVQMKLTAASDSVEREATLGDNSVQLQTVVQYEPDLFITSDSNLNRYEVHPTRTIS
EAIGPEFYTHFRLQNLGCYSVSNLELRLSLPSVAAGDRVFMAVTEVFSYNVTGVNCSVDS
DVSKLKDRQRDVRPLHPEDMQQTDLLNCSRSWCVEVVCEVQQLHRGQTALIRVSRRVHDT
FFRQAKFKAVRIVSAYRLAVQESNLVTLGSGAIWRETVLEVLKGRAIPISLWILIGSIIG
GLLLLALIIFIMWKLGFFTRKQIKDEELED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacaaatacctgctgctcttcaagttcatagttctcctcaaaggtttgtgt
gagtgtttcaacatcgatgttaagcggcctcgtatctacactggtccagaggaggccctg
tttggtttctctgtgctacagcatgacaatgagggggagaaatcgatgctggttggtgct
ccttgggatggcccgtccaataccaggagaggagacgtgtacaaatgcatcgtgggagag
gagaggaactccaactgcaccaaaaccaacctgggtgagagcgcgttacagaatgtatct
aggaacctgaagaactctcatctaggaatgaccctcagtccagactcacctgatggattc
ctggcgtgtgcgcccctgtggtctcaggagtgtggtacgtcagtcttcagtacggggatc
tgtgcttctgtcagtgatgacctggaacccagagagaccatcgcccctacagcacagaga
tgtactacatacatggacatagtgatggttctggatggctccaacagtatctatccctgg
tatgaagtccagaacttcctcagtaacatcctcagcaagttccatatcagcccagaacaa
atgcaggtgggggtgttgcagtacggtgaggttgcggtccatgagtggtcactgagagac
taccagacaacacaggaggtggttgaagcagctaagaacatcagccgacaggaggggcgg
gagacacgcacagcatacgccatccacatgggctgtacggaggcgttcagccctgagcgg
ggggcgagggagggggccaccaaggtcatgattgtggtgacggacggagagtcacatgat
ggggaggagctaccggacgctctggaggagtgtgagaagagaaacatcaccagatacgcc
atcgctgtattgggtcactacatccgcaggcagcaggacccagagacgttcatcagtgag
atcaagtacatcgccagcgaccctgacgacaaatacttcttcaacgtgactgacgaggcg
gcactcaacgacatcgtagatgcactaggagaccgcatcttcactctggaggggacgctg
gggtacaatgagagctcctttgagcttgagatgtcccagatcggcttctccacacacgtt
ctcgatgatgggatcctgtttgggatggtgggggcgtatgactgggacggaggggtgctg
aaggaaggcactgaggggcgcatcatgcccaccagagaggcctttgagtcagagttcccc
caggagctcaagaaccatgctgcctatctgggctacacagtgtcgtcagtcatagtgggt
gactggaggaggctgtatgtggctggagctcccaggttcaaacacaaaggaaaggtaatt
ctgtttgaactgagcaacgatggagatgtcaacatcgcacaggccctcaatggagaacag
attgggtcatactatggcagtgaggtgtgtgggttggacgtggaccaggatggcattact
gatgttctgctggtggcagcacccatgtacctgggccatggcaacaaggaggcgggcaga
gtctacatctactccctcagtggggaggaggtgtttgtgtctaacggtactctgaaggca
gaggataggtcccaggatgctaggtttggctacgccctggcctccgtcccagacctcaac
catgacgggtacactgacttgctggtgggggcacccctggaggacggacacattggggcc
atatacgtctaccacggccagggcatacacatcatccataactacaaacagcgtatcgca
gggtcgtccttgtccccctctctgcagtattttgggcgcagtgtgagtgccagactggac
ctggatggagatggtctgttagacctggctgtgggggcccagggcagcgctgtactactc
agttctcgtagtatagtacagatcaacatgagtctgtccttccagccccactccatcaac
atcatccagaagacgtgtcagagaggagggagggagtctgcctgtctcaacgctacagcc
tgcttcctggctctgtcccactcccctggaactcacagcaacagcttcgagctgtcggtg
gtggccatgttggatgacagaaagttgacagcgagggcgttgtttgacgacagcaaccag
agacagacacagctgggggtcagagttcacacaggagagactgtctgccacaacctgccc
ttccatgtgtttgacacagctgactacatccgtccaatcagcttctccctgcgctttaag
atcaacgacacagagagtggcccagtgctggacgaaggctggcccaccaccttcaagaga
tcgattgctttcttcaaagactgtggcgaggatgatgtgtgtgtcactgatctggtgctg
aaggctcatatggacatctctgggacaagacagcagccctatgtgatccgtagccctcgc
agacgtctggctgtagaagtccagctgcagaacagactggagaatgcctataacaccagc
ctgacgctgcactactcacgcaatctccacttctctagtctcagcatacgggaggatgcc
cagttgaagattgagtgtacatctctcagttccaacagtcactcatgtaacgtcagctat
cctgtgttccgctcccactccaaggtgaacttcatgttagattttgagttcagctgtacg
tctctgctcagtaaagtccagatgaaactcacagctgccagtgacagtgtggagagagag
gctacgctgggagacaacagtgttcagctccagactgtggttcaatacgaacctgacctc
ttcatcaccagtgactccaatctgaaccgttatgaagtccacccaaccagaaccatctca
gaggcaataggaccagagttctatacacacttcaggctgcagaacctgggctgttacagt
gtgagtaacctggagctgaggctgagcctgccctctgtagcagcaggagacagagtcttc
atggctgttactgaggtcttctcgtacaacgtgacaggggtgaactgcagtgtagacagt
gatgtgtcaaagctgaaggacagacagagagacgtacgaccactacatcctgaagatatg
caacagactgacctactgaactgcagcaggtcgtggtgtgtggaggtggtgtgtgaggta
cagcagctgcatcgaggacagaccgctctcatacgagtcagccgcagggtccacgacacc
ttcttcagacaggctaagtttaaggcggtgaggatagtgagtgcctatcgtttggctgtt
caggaatctaacctggtcactctgggtagtggcgccatctggagggagacggtgttggag
gttctaaaggggcgggccatccccatttctctctggattctgattggcagcatcatcgga
ggccttctgctattggccctcatcatcttcataatgtggaagctggggttcttcactcgt
aaacagataaaggacgaggaactcgaggactga
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integrated database retrieval system
